PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_21160V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 254aa MW: 27643.5 Da PI: 9.3082 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.6 | 1.1e-31 | 58 | 115 | 2 | 60 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +++rY+eC +NhA+s+Gg+avDGCgEfmp geegt+aalkCaAC+CHRnFHR+eve e Pp3c2_21160V3.1.p 58 KAIRYRECNRNHAISTGGYAVDGCGEFMPG-GEEGTVAALKCAACDCHRNFHRKEVEGE 115 5789*************************9.999*********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-25 | 56 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.9E-30 | 60 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.0E-28 | 61 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.766 | 62 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-31 | 175 | 251 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.0E-19 | 176 | 250 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.4E-26 | 189 | 245 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MESLVSYKID YTPMPITATF AGLHEFSKLK LFSNTGNRVT NMDEPRPMEA AGAKAKSKAI 60 RYRECNRNHA ISTGGYAVDG CGEFMPGGEE GTVAALKCAA CDCHRNFHRK EVEGEATCDC 120 QNIKRNDPRK RGLMAPGGPS QPGSSQQLAL PTPAQIISRV TAAPFLLGPG PTDSDDGDGG 180 LSGSPSTIKK RFRTRFNNEQ KEKMGVFAEK LGWKIQKHDE AAVQEFCAEV GVKRHVLKVW 240 MHNNKHTIGK KPP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-25 | 190 | 247 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024368812.1 | 0.0 | zinc-finger homeodomain protein 2-like | ||||
Swissprot | Q6YXH5 | 4e-58 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A2K1L2G7 | 0.0 | A0A2K1L2G7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S165_109V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-54 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_21160V3.1.p |
Publications ? help Back to Top | |||
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