PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_20350V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 323aa    MW: 34175.7 Da    PI: 4.6583
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_20350V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.7e-061331481227
                        TS--TTTTT-SS-SSS CS
            zf-CCCH  12 tGtCkyGdrCkFaHgp 27 
                         G C+y  +C+F+Hg+
  Pp3c2_20350V3.2.p 133 IGNCPYNTNCNFSHGM 148
                        69************95 PP
2zf-CCCH18.63.3e-061862021326
                        S...--TTTTT-SS-SS CS
            zf-CCCH  13 G...tCkyGdrCkFaHg 26 
                        G    C+yG++C+F H 
  Pp3c2_20350V3.2.p 186 GstdSCSYGENCNFLHN 202
                        55558***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.7E-5126153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.277127149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-8128155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4188203IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.498190204IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDTTAASELG MREPVAGMDG AGFWDVGTPG LGQWGDNGGN DSVDDNLSRD RAGPRGGGAV  60
NQDFQQTFHF GFGRGGAVLS PNLHRNCFSQ CLVRMEALVI VLFMEMIRGL STLEEELDGE  120
EALLLEQCKQ TLIGNCPYNT NCNFSHGMEE LRKPPPGWED LFASQELPLQ PPSDTGGQRA  180
LEAATGSTDS CSYGENCNFL HNELSVPRAV REAREVAVAA ASGPVVTASP KVEIQLSPTS  240
SSNKEGGGGS STFAELQRCG GGLPDSNAPA RSDKKSGGAH SKDSVAVSSH RRYHSGESFA  300
RFGSKDDISR RGLLEISTVY GD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1L2D51e-173A0A2K1L2D5_PHYPA; Uncharacterized protein
STRINGPP1S165_14V6.11e-116(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-12C3H family protein