PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_20350V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 343aa    MW: 35983.3 Da    PI: 5.5832
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_20350V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.1e-061321481127
                        GTS--TTTTT-SS-SSS CS
            zf-CCCH  11 rtGtCkyGdrCkFaHgp 27 
                        r+G C+y  +C+F+Hg+
  Pp3c2_20350V3.1.p 132 RSGNCPYNTNCNFSHGM 148
                        89*************95 PP
2zf-CCCH18.53.6e-061862021326
                        S...--TTTTT-SS-SS CS
            zf-CCCH  13 G...tCkyGdrCkFaHg 26 
                        G    C+yG++C+F H 
  Pp3c2_20350V3.1.p 186 GstdSCSYGENCNFLHN 202
                        55558***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.779121149IPR000571Zinc finger, CCCH-type
SMARTSM003560.068124148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-8130155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-5131153IPR000571Zinc finger, CCCH-type
SMARTSM0035648184203IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4188203IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.498190204IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDTTAASELG MREPVAGMDG AGFWDVGTPG LGQWGDNGGN DSVDDNLSRD RAGPRGGGAV  60
NQDFQQTFHF GFGRGGAVLH CIIYGNDQGS EHLGRGTRRG RGTAVGAVQA NFDAGREMGS  120
ICYNTKLWCG FRSGNCPYNT NCNFSHGMEE LRKPPPGWED LFASQELPLQ PPSDTGGQRA  180
LEAATGSTDS CSYGENCNFL HNELSVPRAV REAREVAVAA ASGPVVTASP KVEIQLSPTS  240
SSNKEGGGGS STFAGQCLIE DKCHFAHGSD GELVELQRCG GGLPDSNAPA RSDKKSGGAH  300
SKDSVAVSSH RRYHSGESFA RFGSKDDISR RGLLEISTVY GD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375302.11e-100zinc finger CCCH domain-containing protein 56-like isoform X1
TrEMBLA0A2K1L2D50.0A0A2K1L2D5_PHYPA; Uncharacterized protein
STRINGPP1S165_14V6.11e-150(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-17C3H family protein