PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_18410V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | GRAS | ||||||||
Protein Properties | Length: 754aa MW: 83983.8 Da PI: 6.5063 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 352.1 | 8.5e-108 | 371 | 747 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetsekn.......sseelaalkl 83 +v+lLl+cAeav+ + + a +Larl+ + p+g+pm+R+a yf+eAL +rl+ + ++ ++ ++ + +e + s e a+++ Pp3c2_18410V3.1.p 371 MVHLLLACAEAVDMCQSATAGPMLARLRSIYDPEGEPMRRIALYFAEALFERLTIemNRKQSSHHGSCVRFPEPEvdsaaspSLECDIAYQA 462 689*************************************************9863222333333355555444434466667777788899 PP GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175 ++++ P+ kf+hltaNqa+le v++ rvHiiDf+i qGlQWp+++q+La p+gpp+l+ T+v+ ++ ++++tg+rLa+fA++++vp Pp3c2_18410V3.1.p 463 YYQILPFKKFTHLTANQALLEGVANYPRVHIIDFNIRQGLQWPSFIQSLAMLPRGPPQLKFTAVQT----DAATVQKTGNRLAEFARTMHVP 550 ******************************************************************....9********************* PP GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 fef + +++++e+++ +++ + +EalaVn++ +lhrll+++++l++ +L ++sl+P vv+v e +a+hn++sF+ rf++al+yy a+ Pp3c2_18410V3.1.p 551 FEFYI-LEESVESFHQGMISPRAEEALAVNCSDMLHRLLRKEGKLTE----LLGKIRSLQPVVVTVLEVDANHNEPSFMPRFVHALHYYCAV 637 ****9.699******************************99999999....***************************************** PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg..yrveeesg 356 fdslea l r+s +r +E+++++ +i++++a e +r+ rh ++e+W++ + +aGF++v++s +aa+qa+lll +k sd +++ + g Pp3c2_18410V3.1.p 638 FDSLEAALLRNSLDRLRIENHCFSTQIRSIIALEDVDREIRHVRAETWQSHFLQAGFRAVTVSRYAADQAQLLLGLYKpSDRmpFTLSSGFG 729 ******************************************************************************9887789999999* PP GRAS 357 slvlgWkdrpLvsvSaWr 374 l lgW++ p+v+vS+W+ Pp3c2_18410V3.1.p 730 GLSLGWRETPVVAVSSWT 747 *****************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 55.714 | 345 | 724 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-105 | 371 | 747 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 754 aa Download sequence Send to blast |
MAEITHYRPH SDTNTVKFAT VPDLQTYLGI SSWLELNQHW RLGDATKFFK VAEHEGQNSM 60 SSAVDSKRLD SGKSGNQHST ALAMSKEPTS VLDLPSSCSV SLSSQHSMNS VSDGISKALQ 120 TVADQLLSDE QDSAHPMQSA TPETSNMLMD QDVMTWMSLT RGSDHSASDM DPVPDWFHKQ 180 PERLDLNAQQ YYCSKTGLDF HKNPGTMERI CNNLPSSHHH YVAQPFKLIS QAQLTMSETA 240 GNQQTGFFDT STSSNQRAFQ QCRNVKAQGA TLMSMIDGTG AITGSQLLNS TVVPTPELWK 300 LLSSQHDASP QCGNQGPPNK QAPITQARDQ QNRSTSLAIP TQQPQPQLPY HFGQTLYPGV 360 TPQDQETGIH MVHLLLACAE AVDMCQSATA GPMLARLRSI YDPEGEPMRR IALYFAEALF 420 ERLTIEMNRK QSSHHGSCVR FPEPEVDSAA SPSLECDIAY QAYYQILPFK KFTHLTANQA 480 LLEGVANYPR VHIIDFNIRQ GLQWPSFIQS LAMLPRGPPQ LKFTAVQTDA ATVQKTGNRL 540 AEFARTMHVP FEFYILEESV ESFHQGMISP RAEEALAVNC SDMLHRLLRK EGKLTELLGK 600 IRSLQPVVVT VLEVDANHNE PSFMPRFVHA LHYYCAVFDS LEAALLRNSL DRLRIENHCF 660 STQIRSIIAL EDVDREIRHV RAETWQSHFL QAGFRAVTVS RYAADQAQLL LGLYKPSDRM 720 PFTLSSGFGG LSLGWRETPV VAVSSWTFSP PPY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-64 | 363 | 747 | 12 | 379 | Protein SCARECROW |
5b3h_A | 4e-64 | 363 | 747 | 11 | 378 | Protein SCARECROW |
5b3h_D | 4e-64 | 363 | 747 | 11 | 378 | Protein SCARECROW |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024358430.1 | 0.0 | DELLA protein DWARF8-like | ||||
TrEMBL | A0A2K1L228 | 0.0 | A0A2K1L228_PHYPA; Uncharacterized protein | ||||
STRING | PP1S281_32V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP13653 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 1e-71 | RGA-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_18410V3.1.p |