PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_11580V3.9.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 471aa    MW: 53572.9 Da    PI: 7.5746
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_11580V3.9.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.7e-12370410348
                AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48 
                        y+GVr+  ++g+Wv+eIr+    g  + +++lg+f+t++eAa a +a
  Pp3c2_11580V3.9.p 370 YRGVRR--RNGKWVSEIRV----GqTNEKVWLGSFDTEKEAALAFDA 410
                        9***85..47*********....5446**********9999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.106369426IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-11369427IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-19369428IPR001471AP2/ERF domain
SMARTSM003809.1E-13369432IPR001471AP2/ERF domain
CDDcd000182.65E-16370428No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MSTAFGESRR IEVFLSIHWV VKGISGRFSA FQETDLLHTS YSFLSTSELD GLEPSEMIEK  60
KPSRWGLLSR QASVLGRFKN KLRLKKLEWK RFYEQFWGPA PPNPASQDDF NEWPDSCYST  120
EGSHTSKNNS LHLDSSSSED YWALFRQEQI ENPPPFQLGD RSFVPEICPV VPSTFQQDSG  180
MYAQSEQFHL TQGRGDFVTT ALPGSPVVGT TEASLNGQQQ LPTPRLDHTN SFDSNPLSVD  240
DYAETENDAI SEWLQLDLPK SEQQGSSHLN TDIMRSMNTR YSGEASTMPL TPEARLQWFK  300
QFFELGAEEA LTRPHQASTE LGWRVMVRIV CACRKLSRLI RRRRVDEIPP GRAIVRKRNR  360
GFGENRSQLY RGVRRRNGKW VSEIRVGQTN EKVWLGSFDT EKEAALAFDA GKYHCSSQRR  420
CSYNFPESPL LLGPPVNIHE LSPADRKRTI QKLAEDHVKA CTSDQIRSTN *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368687.10.0uncharacterized protein LOC112278963 isoform X2
TrEMBLA0A2K1L1560.0A0A2K1L156_PHYPA; Uncharacterized protein
STRINGPP1S183_112V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.14e-16ERF family protein