PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c27_8050V3.1.p
Common NamePHYPADRAFT_88041
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 539aa    MW: 58504.2 Da    PI: 5.0281
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c27_8050V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.1e-094584981055
                        HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        r RR++iN+++ +L+ l+P+ a      K++ +++L +A++Y+k Lq
  Pp3c27_8050V3.1.p 458 RHRREKINERLKNLQNLVPNgA------KVDIVTMLDEAIHYVKFLQ 498
                        89******************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.18E-13447508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.634448497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-14452507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-12454503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.77E-10457502No hitNo description
PfamPF000101.5E-6458498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MVRFNYMYPV QEQLEAMTDQ HTPSMDSVSS AGEKTSSCIV QQGGNASETS NLWEEWTQGS  60
NGDDSVSTSN FLPELNSSTS SRLAFHQSDI LSTWISGYHP LSQSSLSSEF SHTSDRENHP  120
PAFMQEGLIP SGLILDSDPA LTDIYTRSSS SDSLPYPTAR IMDKALTDHE LESAVPLAYE  180
KGCVPPQVLR NLGPLSPSSP LAFQNGLLNP LRDPWDSCPS ALPWSNVTTA SQTYGQVTTR  240
TFIPDHSASA IDKLEAVATI TAGYGASKPQ HTDVFIEPNG TFQSTPAGWA PQFYDGSEAT  300
GLLVKPMRAI ASLGEAGCGE ATSEFCTKTK PGLLKGGDTI TSPVGSLLGD CKKAESSMKQ  360
VWPGKHRLEL VELVDGEDTK SSPTQLKRPK HSTDYANVLL SDHILKGAEL RSYFHSGDVG  420
LNASQAMDII VIGPALNTNG KPRAKRGSAT DPQSVYARHR REKINERLKN LQNLVPNGAK  480
VDIVTMLDEA IHYVKFLQTQ VELLKSDEFW MFANPHNYNG IDISDPSSMH SPELESNI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1563981e-107EF156398.1 Physcomitrella patens Rhd6-like 6 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367322.10.0uncharacterized protein LOC112278297
RefseqXP_024367324.10.0uncharacterized protein LOC112278297
RefseqXP_024367325.10.0uncharacterized protein LOC112278297
RefseqXP_024367326.10.0uncharacterized protein LOC112278297
TrEMBLA9T4P50.0A9T4P5_PHYPA; Predicted protein
STRINGPP1S164_82V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.12e-38ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]