PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c27_7560V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 425aa    MW: 47668.4 Da    PI: 5.6294
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c27_7560V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.92.3e-54211491129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelv++yL++kv++ ++e+ ++i  vd +++ePwdLp k+k +ekewyf+s rd+ky+tg+r+nratk+gyWkatgkd++v
  Pp3c27_7560V3.3.p  21 LPPGFRFHPTDEELVTFYLANKVRDPRFEV-RTICVVDFNECEPWDLPGKAKVGEKEWYFYSLRDRKYPTGTRTNRATKTGYWKATGKDRDV 111
                        79****************************.88***************99999*************************************** PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                        +++ +++lvg+kktLvfy grap+g+kt+W+mheyrle
  Pp3c27_7560V3.3.p 112 MNSgTHSLVGMKKTLVFYMGRAPRGVKTNWIMHEYRLE 149
                        **966677****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-6219177IPR003441NAC domain
PROSITE profilePS5100559.02721177IPR003441NAC domain
PfamPF023652.3E-2722148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MASMCNVSKI VGIRQDCNME LPPGFRFHPT DEELVTFYLA NKVRDPRFEV RTICVVDFNE  60
CEPWDLPGKA KVGEKEWYFY SLRDRKYPTG TRTNRATKTG YWKATGKDRD VMNSGTHSLV  120
GMKKTLVFYM GRAPRGVKTN WIMHEYRLER DSTSRFHGQQ SLGPKQDEWV ICRVFQKFIG  180
NKKSGVTHGD SPYQLIDSHS ALQRDSSPNP AVTDSGECDA CTGTDSCYNC QDSYPQDVSL  240
ALGDVATALP VQWVHTMPNS KVPGSISMVP SAMDTDNLMK ETYYNQNAIN SGMLNHASIP  300
QSIFAHPSTP MRCFDNLLGN NRIRAKQEAS YTSNEGEDEA QSSGKLNLDC IAWPSDNVLY  360
DQEIPCDSPL SPLQTVTEES GQLSCLTDGT FGDDHQSRML RYRWYSSLPE VAGCIDGLQP  420
EWAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-531817714165NO APICAL MERISTEM PROTEIN
1ut4_B7e-531817714165NO APICAL MERISTEM PROTEIN
1ut7_A7e-531817714165NO APICAL MERISTEM PROTEIN
1ut7_B7e-531817714165NO APICAL MERISTEM PROTEIN
3swm_A7e-531817717168NAC domain-containing protein 19
3swm_B7e-531817717168NAC domain-containing protein 19
3swm_C7e-531817717168NAC domain-containing protein 19
3swm_D7e-531817717168NAC domain-containing protein 19
3swp_A7e-531817717168NAC domain-containing protein 19
3swp_B7e-531817717168NAC domain-containing protein 19
3swp_C7e-531817717168NAC domain-containing protein 19
3swp_D7e-531817717168NAC domain-containing protein 19
4dul_A7e-531817714165NAC domain-containing protein 19
4dul_B7e-531817714165NAC domain-containing protein 19
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.119523e-88protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367536.10.0NAC domain-containing protein 59-like
RefseqXP_024367537.10.0NAC domain-containing protein 59-like
TrEMBLA0A2K1IB310.0A0A2K1IB31_PHYPA; Uncharacterized protein
STRINGPP1S164_37V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.25e-75NAC domain containing protein 38