PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c27_600V3.3.p | ||||||||
Common Name | PHYPADRAFT_95428, WRKY34 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | WRKY | ||||||||
Protein Properties | Length: 460aa MW: 50512.9 Da PI: 7.1706 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 69 | 6.7e-22 | 243 | 301 | 2 | 59 |
--SS-.EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgyn.WrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDg++ W+KYG K +++s++ r+YY+C+ ++C++kk v+ +++dp+++e+tY g+H ++ Pp3c27_600V3.3.p 243 DDGHRgWKKYGNKAIQNSNHCRGYYKCSLKECRAKKMVQLTDRDPTLFEVTYVGKHSCS 301 688866**************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-23 | 238 | 302 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-20 | 241 | 301 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.2E-22 | 242 | 302 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-19 | 243 | 300 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.421 | 249 | 303 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MLSTAIVHQR DLLNLVVSHY PQSIVATPIA DERIGCGVLT PEFPISPLVL QELKAYIENS 60 LNYCHLALCS LREINLNSFT SSPSDSSPST LNTSMRSSSA VEGQFPPGWN TKFFDVTNHA 120 KDHLSPRLNV VAPLNSLRSS LHKDPLPYHS ITTKGNGCTP RNSGSPRFTD PFSQPPPGEG 180 SSTQQQHPHE QNLNTRLLAV DSNPPWPRIS SAANSEARKF GGQKAKPGVV LQKLNDGKRG 240 IPDDGHRGWK KYGNKAIQNS NHCRGYYKCS LKECRAKKMV QLTDRDPTLF EVTYVGKHSC 300 SSSTAHPRCR HRSTQMLSSS LVHVGSNGSS EGGQATSTVT KEDRAEDWKT QRAAASIGTN 360 LVVDVSNPII DNGWKGGKYS NEHNYSYSYF NMGMTTSTTA STASEEPKQC EVGEGDDDVD 420 QDEEGDVCMD TYLHQSSRHH QAAYSLWHDF DTYPTLSTD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024367367.1 | 0.0 | uncharacterized protein LOC112278317 isoform X1 | ||||
TrEMBL | A9TPH2 | 0.0 | A9TPH2_PHYPA; Transcription factor WRKY34 | ||||
STRING | PP1S280_53V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 4e-15 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c27_600V3.3.p |
Entrez Gene | 5943690 |
Publications ? help Back to Top | |||
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