PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c26_8569V3.1.p | ||||||||
Common Name | PHYPADRAFT_91889 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | WOX | ||||||||
Protein Properties | Length: 221aa MW: 24191.2 Da PI: 9.8035 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.1 | 1.2e-17 | 14 | 75 | 2 | 57 |
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R++ +++ql+ Le+ Fe+ ++p+++++++++ +l +++e++V++WFqNr+a+ k+ Pp3c26_8569V3.1.p 14 RSRWSANQQQLQNLESIFEQgnGNTPNKARIKDITIELnqfgHISETNVYNWFQNRKARAKR 75 89*****************77689************************************97 PP | |||||||
2 | Wus_type_Homeobox | 81.4 | 1.1e-26 | 13 | 76 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGl.rtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RW+ +++Q++ Le+++++G tPnk++i++it eL+++G+i+++NV++WFQNrkaR ++k Pp3c26_8569V3.1.p 13 TRSRWSANQQQLQNLESIFEQGNgNTPNKARIKDITIELNQFGHISETNVYNWFQNRKARAKRK 76 689*****************998358************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.84E-15 | 9 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.653 | 10 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.1E-10 | 12 | 80 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-12 | 13 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.50E-9 | 14 | 76 | No hit | No description |
Pfam | PF00046 | 2.3E-15 | 14 | 75 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MACEQRASTN PPTRSRWSAN QQQLQNLESI FEQGNGNTPN KARIKDITIE LNQFGHISET 60 NVYNWFQNRK ARAKRKLQQR VGRTRRLSCT ATGSTCKMRS GEAEISGDVQ PYLPDAKRLK 120 AVGPQSQSAT GSAATPASAL DAGSSIAAAE IDTELRSRPA LMPLTSITPL TMPLTVTRVE 180 AIEETLGGGA EHWHDQGLPV LLPPSLHGET SFIDYYRFRK * |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024367047.1 | 1e-164 | WUSCHEL-related homeobox 6-like | ||||
TrEMBL | A0A2K1ICB3 | 1e-163 | A0A2K1ICB3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S217_9V6.1 | 1e-164 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1873 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20700.1 | 2e-17 | WUSCHEL related homeobox 14 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c26_8569V3.1.p |
Entrez Gene | 5940400 |
Publications ? help Back to Top | |||
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