PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_3290V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 718aa    MW: 76646.2 Da    PI: 7.7448
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_3290V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1054.3e-33425479155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+rlrWtpeLHe+Fv+av+qLGG+e+AtPk++l++m+v+g+t++hvkSHLQkYRl
  Pp3c26_3290V3.1.p 425 KTRLRWTPELHEKFVDAVAQLGGPERATPKAVLRVMGVEGITIYHVKSHLQKYRL 479
                        68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.582422483IPR017930Myb domain
SuperFamilySSF466897.7E-17424480IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-30424479IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-24425479IPR006447Myb domain, plants
PfamPF002496.9E-10427478IPR001005SANT/Myb domain
PfamPF143795.5E-20509554IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MVLSPLQIEQ TGKCTIAAYN TWLPTFWRSF LSPSFLFLLS HAKLSMPSQM TPSLTTLSAH  60
QRGGSNMSPR ASPGFPQTLA SPDTRMPFIS QGFAASSSIP GALACGSQPG GEANQHQQLR  120
FSSTGASGSS SSSWQTQSPY GQYQGTTPSM STQMSRIHHE SGHGNLAGGE QTASSSSFQM  180
PYNISTSFSQ QWRSTSGQWD CTGSPQSGEH WPVGGMTTGV LSGPGGGSRP AHAHLSVLVP  240
PNRSGISLDS PRGGMHPPGA GDSGGFSMES GPQMPFPKLG SGREARSATQ LRQYPSEAGL  300
LITPKTDGAG AILCDPLQAL LDGSSEQRLP HSGECTSSPT GEASSNLPEW EKNWMENFPD  360
SYNEGRSLDP NNARGFQQPE KFYLVAPPQP IAMRDPGTEQ QQPGTASGSS PVPPAAFSSA  420
AEHVKTRLRW TPELHEKFVD AVAQLGGPER ATPKAVLRVM GVEGITIYHV KSHLQKYRLI  480
PEVSSEDSRN DRRRNDSSLS PMDIHSSLQM TQALQMQMEV QKRLHEQLEI QRELQLRIEA  540
QGQSLKMMLE AQAKASGVFG VRSDRAGKEL IPPATDAIAD RDFPTQSSPA PESAAAGART  600
SSPGYEQSTK RARVEVPNLV IVPQEPYRSE AYRHQGNNKM GLLHDRSSSA WNSSSSLQGS  660
LPSRLGRSSS TDQVEGALAM SAVSDGGGGT PQRHTASQGC MPQQPGNMTS KSLQASV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-22425478154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-22425478154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-22425478154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-22425478154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.32380.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366696.10.0uncharacterized protein LOC112277984
TrEMBLA0A2K1IBN30.0A0A2K1IBN3_PHYPA; Uncharacterized protein
STRINGPP1S306_52V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.18e-52G2-like family protein