PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_15000V3.1.p
Common NamePHYPADRAFT_170100
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 457aa    MW: 49124.6 Da    PI: 8.5583
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_15000V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12251301155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h   Er+RR+ +N  f++Lr+llP++      K +K++++ + ++YI sLq
  Pp3c26_15000V3.1.p 251 QRENHIWSERQRRKGMNYLFSTLRSLLPHP----TSKTDKSTVVGEIIKYIESLQ 301
                         7999*************************9....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.24E-15248313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.55E-13248304No hitNo description
Gene3DG3DSA:4.10.280.105.0E-14249315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.027250300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-10251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9256306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MPSHRHELDA GGPALQLRAA ALFPNYLLSC TPQAHCRSDS LNSYPLASLV DMDTWLTASG  60
LETTTRNCGS PTALHNYQQQ AEKPMGSVDT NPGIGTGNVF PQIGGYQSDT WWPPINAQMF  120
PRDISTQHGI SGTKPGAGNS MTFTTNNYTM DSSWCHNIAN TVTTVANADM CDLNAPGEPP  180
SAIPVASVAP CMAIVAAAGA ASTRATKISR KGNQSKGGAV SAPTSPSELR PPREKSLGVQ  240
KKWNGKRPVS QRENHIWSER QRRKGMNYLF STLRSLLPHP TSKTDKSTVV GEIIKYIESL  300
QVKLDMLTKK RQQVMAARTL SAFHSIDTLP KAFVSNGLTL VDHSSDPMSM TAITALPPPG  360
SESCLQSYLG SNVGLHVCGL NVFITTSSPR GQRGLLQQLL VTIHKHALDV INATISTSNA  420
SIFHCLHCQA SQDAELLNND LHSALQSVIT NFEPQF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.169220.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366824.10.0uncharacterized protein LOC112278046
TrEMBLA0A2K1ID390.0A0A2K1ID39_PHYPA; Uncharacterized protein
STRINGPP1S231_17V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.13e-11ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]