PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_13600V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB
Protein Properties Length: 340aa    MW: 37355.6 Da    PI: 6.7728
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_13600V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-1558105148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+ Ed  l  ++k +G g+W++ +++ g+ R++k+c++rw++yl
  Pp3c26_13600V3.2.p  58 KGPWTEAEDTTLSAYIKAHGEGNWRLLPKCAGLSRCGKSCRLRWLNYL 105
                         79********************************************97 PP
2Myb_DNA-binding51.13.2e-16111156148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+++ +E++l+v ++++lG++ W++Ia +++ gRt++++k++w+++l
  Pp3c26_13600V3.2.p 111 KGKFSWDEEDLIVTLHALLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 156
                         79********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.43253105IPR017930Myb domain
SuperFamilySSF466891.04E-2856152IPR009057Homeodomain-like
SMARTSM007171.5E-1257107IPR001005SANT/Myb domain
PfamPF002497.2E-1458105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2159112IPR009057Homeodomain-like
CDDcd001673.06E-1060105No hitNo description
PROSITE profilePS5129425.915106160IPR017930Myb domain
SMARTSM007173.3E-15110158IPR001005SANT/Myb domain
PfamPF002495.1E-15111156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-24113160IPR009057Homeodomain-like
CDDcd001671.24E-11113156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MPPATKGAEI GKPGSPQEFN RHNRSCAALP TVVGGAAAAG SSNMGRSQCS KGEGGIYKGP  60
WTEAEDTTLS AYIKAHGEGN WRLLPKCAGL SRCGKSCRLR WLNYLRPGLK KGKFSWDEED  120
LIVTLHALLG NRWSLIAGRI PGRTDNEIKN YWNTHLSRKL RNKGIDPCDH KVGQLTLNSK  180
YTVDRSNSEL YAGEFIHQQP TTSAEKCTTT SSPAYSKHHS PADDYEHLAL PPVKRIPPVQ  240
GKTISSPNLS YPTYSISDGS NSSGEDEYLC PYGQLCCMDW ISASDNHVLE CPPDRSHHYS  300
VEQQNPVFNA DMSTLSISDF DCLDFDIKEF QDDAANSDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25561605108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366310.10.0myb-related protein Hv1-like isoform X1
TrEMBLA0A2K1ICX40.0A0A2K1ICX4_PHYPA; Uncharacterized protein
STRINGPP1S6_416V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.16e-60myb domain protein 4