PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_10830V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 539aa    MW: 59372.1 Da    PI: 6.3908
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_10830V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.25.2e-074635021054
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR++i +++ +L+ l+P+      +K++ +++L +Av+Y++ L
  Pp3c26_10830V3.1.p 463 RARREKIAERLRKLQHLIPNG-----GKVDIVTMLDEAVHYVQFL 502
                         89*****************98.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.491453502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-11455517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-8459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-11459513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.42E-8462506No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MTDLISILES SGSSREEMCP VAVPSSVASS CERLIWEGWT AQPSPVEEST TSKLLPKLLP  60
ELETSSYSAL TLQQPDALSS ILSVLHPFSH YSSASLELAR NPDWSLKSSN PLRESSSEAG  120
IRTSSFEGLY SGQHTTKKIH LGVIPYHLSE DQRQCAVSPP ENECRLLSAN SSGSLHWWHS  180
IGPESPSSTL AFHNIGIQHS TFEKCEPRGQ SHSSWPAASG TSPTVQYFHA HSADNEGVEV  240
VKQDDSQISK ALATYQPHGD HSLVLNSDRI ASTTSHSEDP CGPKPGRRPA ASYDTEMILS  300
PSESFLTTPN MLSTLECVIS GASNISDQYM NFVREPQEQR LSSISDLSLI PDSHADPHSI  360
GFISGTFRTD SHGTGIRKNR IFLSDEESDF LPKKRSKYTV RGDFQMDRFD AVWGNTGLRG  420
SSCPGNSVSQ MMAIYEFGPA LNRNGRPRVQ RGSATDPQSV HARARREKIA ERLRKLQHLI  480
PNGGKVDIVT MLDEAVHYVQ FLKRQVTLLK SDEYWMYATP TSYRSKFDDC SLVPGENN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1563961e-107EF156396.1 Physcomitrella patens Rhd6-like 4 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366155.10.0uncharacterized protein LOC112277727 isoform X1
RefseqXP_024366156.10.0uncharacterized protein LOC112277727 isoform X1
RefseqXP_024366157.10.0uncharacterized protein LOC112277727 isoform X1
RefseqXP_024366158.10.0uncharacterized protein LOC112277727 isoform X1
TrEMBLA0A2K1ICK30.0A0A2K1ICK3_PHYPA; Uncharacterized protein
STRINGPP1S6_167V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-32bHLH family protein