PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_10130V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 286aa    MW: 32400.1 Da    PI: 8.0624
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_10130V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM262.6e-08127102128
                 NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                         ++ktLvfy+grap+g k+dW++he rl
  Pp3c26_10130V3.1.p   1 MRKTLVFYQGRAPHGIKSDWIVHELRL 27 
                         89**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.75162IPR003441NAC domain
SuperFamilySSF1019411.09E-10162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MRKTLVFYQG RAPHGIKSDW IVHELRLDAE SEPPTHANSC STFNFCTFLT DGGWVVCRVF  60
KKNKNLKMEM QQERAISYEK QMGALPPEAA GSPTTSSGSD GTELNHEETI SGSFHNDSYF  120
ENRSLSLPLG SWSSAEDTAL RVIKEQADDM CFEDEMLRFG FYGIDHDCDC GGESLNDNMA  180
WLGCFNPKLQ STKSPKWVKV LVSPMTSRNR VFPSRSKDDV RKSRGSRKRA ARFASSDWGR  240
KEENDVVSQQ EQRTVFSWLQ DAGTRSQLRR REQRDQRVSS SSPSR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.125420.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8980887e-53AB898088.1 Physcomitrella patens PpVNS8 mRNA for NAC transcription factor PpVNS8, complete cds, ecotype: Gransden 2004.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383178.14e-99uncharacterized protein LOC112285978
RefseqXP_024383179.14e-99uncharacterized protein LOC112285978
RefseqXP_024383180.14e-99uncharacterized protein LOC112285978
TrEMBLA0A2K1ICH30.0A0A2K1ICH3_PHYPA; Uncharacterized protein
STRINGPP1S221_71V6.13e-97(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61910.11e-16NAC domain protein 66