PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c25_8610V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family SBP
Protein Properties Length: 572aa    MW: 62430.2 Da    PI: 9.2127
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c25_8610V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.23.5e-41235312178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cq+egC+adls+ak+yhrrhkvCe+hska +v+++g++qrfCqqCsrfh l efD++krsCr+rLa+hn+rrrk+q+
  Pp3c25_8610V3.1.p 235 MCQAEGCKADLSQAKQYHRRHKVCEHHSKALNVVANGQTQRFCQQCSRFHLLGEFDDGKRSCRKRLADHNRRRRKPQP 312
                        6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.6E-36228297IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.838233310IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.27E-38234314IPR004333Transcription factor, SBP-box
PfamPF031102.9E-31236309IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MHGRIPVLPS FVVYGMISSA NTNEQQDDPR RSTENWDNPV AVVTLDQVPS QYRSANRREW  60
EWDPMILAQH PGSGGSTDDV DGDRMKNQIS AGTMSSLRAS YNFNMLSAGL PSNFTQNHMG  120
IYSSAGIRTF GSLDGPAQVP TQPNTQSVHE PSGIPGLAAA SGAGLENDIR CNDQRRREFF  180
AAGMHNHHVK REKDNDGHSR IGLNLGVRTY FSTKETVANL GKRPTAGSPG SQVPMCQAEG  240
CKADLSQAKQ YHRRHKVCEH HSKALNVVAN GQTQRFCQQC SRFHLLGEFD DGKRSCRKRL  300
ADHNRRRRKP QPNASAPGGT TAESPGMKRE DNLSGFNRTN DSKTMNMPLK SRSSLSSVSI  360
EDSDNQKPGS VGNNPNLRSS GKEYGRGAGD EKPQSRSGMQ MSCQAVSGSE AQTLFSSMST  420
VPLMLQSTKK QRTMTEGTSN HGPDHSLHQH LQAGNSGQTG PNLSLSFFGG QMGRIHTMPN  480
TTYNGMEPRV SWLRPSNTRS ELTQVVGRLG SLNYQHLMST DSKSGITSAS ANSSNSQEHD  540
VQVYSPSSQN LIPCDIASPE WMLGTIPEWM L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-28227309184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292309KRSCRKRLADHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0164960.0EF016496.1 Physcomitrella patens SBP-domain protein 12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365405.10.0uncharacterized protein LOC112277409
RefseqXP_024365406.10.0uncharacterized protein LOC112277409
RefseqXP_024365407.10.0uncharacterized protein LOC112277409
RefseqXP_024365409.10.0uncharacterized protein LOC112277409
RefseqXP_024365410.10.0uncharacterized protein LOC112277409
RefseqXP_024365411.10.0uncharacterized protein LOC112277409
TrEMBLA0A2K1IE940.0A0A2K1IE94_PHYPA; Uncharacterized protein
STRINGPP1S50_127V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-48squamosa promoter binding protein-like 8