PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c25_6940V3.1.p

Common Name

PHYPADRAFT_235366, PPTIM3

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

M-type_MADS

Protein Properties

Length: 297aa MW: 32542.5 Da PI: 4.9289

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c25_6940V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.8	1e-21	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien+s rqv fskRr g++KKA+ELS+LC+ ev vi+fs+ gk + + Pp3c25_6940V3.1.p 9 KKIENSSARQVCFSKRRGGLIKKASELSILCGSEVGVIVFSQAGKAFSF 57 68******************************************97766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	7.98E-26	1	70	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.1E-33	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	27.544	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.73E-36	2	68	No hit	No description
PRINTS	PR00404	1.0E-21	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-21	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-21	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009960	Biological Process	endosperm development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MGRAKIEIKK IENSSARQVC FSKRRGGLIK KASELSILCG SEVGVIVFSQ AGKAFSFGHP 60 SIDYVIDKTL SGELSDSDSG TAVTDVASQK VQQVQALQHQ QKLLTKLLAS ERELQHRLLS 120 YPFWWQKPLT NYSPQELQHQ GQRLDGIYEM LMNRAAALQQ DMTVGTPVHS TQNRRTNTES 180 GDSSAIMEAC ATPNMAEMHA PEQEHETPID TQDFPIMTNL AALSGQAVGD SYDREVSEFV 240 EGCLPDGPLA AADHGQYVDM NSASPSWENL TQLSRSFDMA PVPKQDMETA KLELPG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	4e-14	1	90	1	91	MEF2 CHIMERA
6bz1_B	4e-14	1	90	1	91	MEF2 CHIMERA
6bz1_C	4e-14	1	90	1	91	MEF2 CHIMERA
6bz1_D	4e-14	1	90	1	91	MEF2 CHIMERA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024365143.1	0.0	agamous-like MADS-box protein AGL61
TrEMBL	A9SKN4	0.0	A9SKN4_PHYPA; Type I MADS-domain protein PPTIM3
STRING	PP1S88_174V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	3e-24	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	Pp3c25_6940V3.1.p
Entrez Gene	5930120

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]