PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c24_20450V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Trihelix | ||||||||
Protein Properties | Length: 240aa MW: 27503.2 Da PI: 6.0441 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 25.3 | 4e-08 | 12 | 103 | 2 | 85 |
trihelix 2 WtkqevlaLiearremeerlr........rgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 W ++e+ a++e e +++ r++ + W+ +s+++ e f r + C++ w+ l + y++i+++e+k +s+ +++c+ + Pp3c24_20450V3.4.p 12 WVDDEIYAMLESMLEPMREFVleskgvaaRASVGFNTWDYISDNLfDEYCFDRASMSCQQQWDTLLQSYRAIQDHESKIQSD-TRSCVSYW 101 8899999999888744444442221122245577899********667777***************************9655.55788777 PP trihelix 84 ql 85 ++ Pp3c24_20450V3.4.p 102 KI 103 65 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MPSWRRVPGR PWVDDEIYAM LESMLEPMRE FVLESKGVAA RASVGFNTWD YISDNLFDEY 60 CFDRASMSCQ QQWDTLLQSY RAIQDHESKI QSDTRSCVSY WKIYAEERSN KKLPLAFDLE 120 WYKLIEKICA AKIVEENCMK KYRFMCSEFD EINTMSEYEF LSGVSTTTME SQTEVAAGSY 180 DSAAHGRNDK VGFRISTFTS ILKCGPGLGR KEGWKALNLI LGPRIDGRPA HFHSGRHGC* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024363263.1 | 0.0 | uncharacterized protein LOC112276311 isoform X2 | ||||
TrEMBL | A9SPF9 | 1e-167 | A9SPF9_PHYPA; Predicted protein | ||||
STRING | PP1S101_58V6.1 | 1e-168 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 1e-07 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c24_20450V3.4.p |