PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_7520V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 425aa    MW: 48210.3 Da    PI: 7.8121
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_7520V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.9e-06151174123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        y+C++Cg+ +++++ Lk+H r  H
  Pp3c23_7520V3.1.p 151 YVCGYCGRKCKTNEKLKKHFRDlH 174
                        9******************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10102.5E-969151IPR029060PIN domain-like
SuperFamilySSF576677.05E-5150177No hitNo description
PROSITE profilePS5015711.24151179IPR007087Zinc finger, C2H2
PROSITE patternPS000280153174IPR007087Zinc finger, C2H2
CDDcd061671.63E-12216307No hitNo description
PfamPF019365.6E-6227300IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10102.5E-9236297IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MARRGSFLAQ TLLSKLVSSP SPLPSARLFA VFGIRSLCSG TISAPPLPSG AGKGIGEEDE  60
RPHSAEIDHE SRKVAVFWDL DNKPPRNVPP YDAAVRLIEM AAGFGEVVDV AAYANRYAFA  120
YLPLWVKEQR KERRQLDRLE RAGIIKPSEP YVCGYCGRKC KTNEKLKKHF RDLHERERNK  180
RMNRMNSLKG NKRLKYRASL SEKEERYRAA AKEVLVPQVG YGLAGELRRA GVYVRMVSDK  240
SQAADEALKS HMNRSIRQGV DCICLVSDDS DFANILKLAQ SKHLHTVVVG DSSSLSRFAD  300
EKFSWRDVAS GAALAVANEI EGQWSLEDGY KNGFEDRFYP EYERRRARTG NNWDFSISDS  360
DSEEDFWDID EGKEVMDPEG NAVWPMESLA NERCEKKVLT RKDFWWLPHS DEDLPESHRL  420
NKTE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.158950.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362154.10.0uncharacterized protein LOC112275762
TrEMBLA0A2K1IID70.0A0A2K1IID7_PHYPA; Uncharacterized protein
STRINGPP1S10_268V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP30481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.18e-79C2H2 family protein