PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c23_5390V3.2.p

Common Name

PHYPADRAFT_97669

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 371aa MW: 40382.2 Da PI: 7.3106

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c23_5390V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.7	5.2e-28	72	125	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prl+W+++LH++Fv a+eqLGG++kAtPk+il+ m++ gL l++vkSHLQ+YR Pp3c23_5390V3.2.p 72 PRLKWSEDLHRCFVWAIEQLGGPQKATPKAILREMNISGLKLAQVKSHLQMYRC 125 8****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-25	69	126	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.06E-13	71	125	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-22	72	125	IPR006447	Myb domain, plants
Pfam	PF00249	3.3E-6	73	124	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MSSFYEPYDG GFWECGSPSR RKTSSADGMP GGSNVSNNII QNTANCETAS RPQGSRRSAD 60 GRTRRYIQSG APRLKWSEDL HRCFVWAIEQ LGGPQKATPK AILREMNISG LKLAQVKSHL 120 QMYRCSKCGM KYDSSSGLRR GGVHYDSTSD PDPRVWNLEP RVQGSWMKEA GQLINFMKII 180 KSRTALSKQN SAGHNFIAAS TLDSFGRVNH TISCASLSSP DKQHELTSAA DPTPELSEEV 240 YPNLFKILKL LEVAKSGEFG VLGNEELGSR QSPSDLLLAG DTDVAGQCQS AEDLAHDLLM 300 AMSEGEYLKT GSTFISELHK TTHGAIGSEV SYEPLSLGLA TSSVDVRPDR STLDLTGQFS 360 RSHLSLSHPF *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MSSFYEPYDG GFWECGSPSR RKTSSADGMP GGSNVSNNII QNTANCETAS RPQGSRRSAD  60
GRTRRYIQSG APRLKWSEDL HRCFVWAIEQ LGGPQKATPK AILREMNISG LKLAQVKSHL  120
QMYRCSKCGM KYDSSSGLRR GGVHYDSTSD PDPRVWNLEP RVQGSWMKEA GQLINFMKII  180
KSRTALSKQN SAGHNFIAAS TLDSFGRVNH TISCASLSSP DKQHELTSAA DPTPELSEEV  240
YPNLFKILKL LEVAKSGEFG VLGNEELGSR QSPSDLLLAG DTDVAGQCQS AEDLAHDLLM  300
AMSEGEYLKT GSTFISELHK TTHGAIGSEV SYEPLSLGLA TSSVDVRPDR STLDLTGQFS  360
RSHLSLSHPF *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024362166.1	0.0	uncharacterized protein LOC112275770
TrEMBL	A9TV35	0.0	A9TV35_PHYPA; Predicted protein
STRING	PP1S331_44V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42660.1	1e-21	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c23_5390V3.2.p
Entrez Gene	5945663

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]