PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_10680V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 567aa    MW: 61177.2 Da    PI: 8.0013
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_10680V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.84.1e-32332390159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dgy+WrKYGqK vk+s++prsYYrCt ++Cpv+kkversa+d ++v++ Yeg+H+h 
  Pp3c23_10680V3.2.p 332 MEDGYKWRKYGQKAVKNSPHPRSYYRCTNPKCPVRKKVERSADDSELVITSYEGTHTHV 390
                         58********************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-33317391IPR003657WRKY domain
SuperFamilySSF1182909.68E-28326391IPR003657WRKY domain
PROSITE profilePS5081130.251327392IPR003657WRKY domain
SMARTSM007742.0E-37332391IPR003657WRKY domain
PfamPF031061.0E-25333389IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MPSSTPLSTI VIEDDDGDGI RRESDLERLM RSLSDDVSSV NHQKQRVGYD QLLHQQHHEF  60
SHPSSMLTTH TTSFSQSPSF LADLLSMPSP ASTISWNSTD LDPFSRWVAS HDFSSSSTSS  120
TINHGCRLSR RQPQSQQGTH WESSPQHPPW LPQQGGESRH VYVDTLQEIV SNSPASWNQQ  180
LAVSSTAAVD LTKTSHSASR SSNRHTPLGS PSPTSWTSPT HLNSASSTIP STPNSPLISG  240
SFSIAAVEED QSHHGTGSSS VGPSVLLPHP AVGHSGSTSD KRKSPDQAAN ESCDEIQSLD  300
CNMPSTKSKR KGLKRMREPR YSIQTRSILD IMEDGYKWRK YGQKAVKNSP HPRSYYRCTN  360
PKCPVRKKVE RSADDSELVI TSYEGTHTHV SPGTGSRAAS DAPFLPDSGE YPPGGAPYVP  420
PTNLTPDLAP SSSSRTRLEY VASQSSPKTI PMMISHGATA TTATAMATAS QSRPVCEVEP  480
SFLASTRNAG LLRAQQVSAG DSHPSSQVTK SGSDNLVQNL QGAMYWRSTE AHFSGRAQGS  540
VSLRPSSTSQ ASSSGGLLED IVRHRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-27320392274WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361570.10.0probable WRKY transcription factor 33
TrEMBLA0A2K1IIU70.0A0A2K1IIU7_PHYPA; Uncharacterized protein
STRINGPP1S137_252V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.23e-35WRKY DNA-binding protein 57