PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c22_7230V3.4.p | ||||||||
Common Name | DELLAb, GAL1, PHYPADRAFT_235432 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | GRAS | ||||||||
Protein Properties | Length: 553aa MW: 60630.5 Da PI: 5.9302 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 434.7 | 6.9e-133 | 183 | 550 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets.eknsseelaalklfsevsPil 91 lv+ Ll+cAe ++ g+l+la+++L r++ l+ p g pm ++a++f AL r+++ +++ + ++ +++ se l++ f+e++P+l Pp3c22_7230V3.4.p 183 LVHSLLACAESIQRGNLNLAEQTLRRIQLLSLPPG-PMGKVATHFIDALTCRIYG---VAFSSGNNVGSNqSDSLSELLHF--HFYETCPYL 268 689************************99988876.9******************...33333333333303345666555..4******** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 kf+h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp+lR+Tg+g+p+sg ++ l+e+g +La++Ae+++v+fef+ +va Pp3c22_7230V3.4.p 269 KFAHFTANQAILEAFAGQKQVHVIDFNLMHGLQWPALIQALALRPGGPPRLRLTGIGPPQSGGSDVLQEIGMKLAQLAETVKVEFEFRGVVA 360 ******************************************************************************************** PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eak 274 +l+d+++++L++ +gEa+aVn+v+qlh+ll + +s+ +devL+ + l+Pk++++ve+ea+hn++sFl rf+eal+yys++fdsl + + Pp3c22_7230V3.4.p 361 VKLDDIKPWMLQICHGEAVAVNSVFQLHKLLYSAGSVIP-IDEVLRSARALKPKIFTIVEHEANHNQPSFLGRFTEALHYYSTMFDSLeACS 451 *******************************88888887.************************************************5567 PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 lp++s+e+ ++ +++lgrei n+vace a+r+erhe+l +W++r+ +aG++p++l+ +a kqa++ll ++++dgyrvee+ g+l+lgW++rp Pp3c22_7230V3.4.p 452 LPSDSSEQ-VLAEMYLGREINNIVACEDAARVERHENLVQWQMRMLKAGYRPIQLGLNAFKQASMLLTMFSGDGYRVEEKLGCLTLGWHTRP 542 77776665.556667***************************************************************************** PP GRAS 367 LvsvSaWr 374 L+s+SaW+ Pp3c22_7230V3.4.p 543 LISASAWQ 550 *******6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.822 | 157 | 530 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-130 | 183 | 550 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006808 | Biological Process | regulation of nitrogen utilization | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0010233 | Biological Process | phloem transport | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016874 | Molecular Function | ligase activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
MAYQYYPGST RYEATGGALV DGQFRHANFM QPSDLVQHLE QLHSVLGTVS QDSPNIPAHH 60 TLDAGAQTSN NRTSDLAGWI DGMIDELSFN NAGTMAAPQQ RSLTEDSLHQ NELEASSSHD 120 SSLDTGSSRL PTLHYQNTPA VGNNFLATPQ NDASQLNANR ATGAVLEQQP SPMGEDEDNG 180 VRLVHSLLAC AESIQRGNLN LAEQTLRRIQ LLSLPPGPMG KVATHFIDAL TCRIYGVAFS 240 SGNNVGSNQS DSLSELLHFH FYETCPYLKF AHFTANQAIL EAFAGQKQVH VIDFNLMHGL 300 QWPALIQALA LRPGGPPRLR LTGIGPPQSG GSDVLQEIGM KLAQLAETVK VEFEFRGVVA 360 VKLDDIKPWM LQICHGEAVA VNSVFQLHKL LYSAGSVIPI DEVLRSARAL KPKIFTIVEH 420 EANHNQPSFL GRFTEALHYY STMFDSLEAC SLPSDSSEQV LAEMYLGREI NNIVACEDAA 480 RVERHENLVQ WQMRMLKAGY RPIQLGLNAF KQASMLLTMF SGDGYRVEEK LGCLTLGWHT 540 RPLISASAWQ CA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-64 | 190 | 549 | 26 | 378 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.16492 | 0.0 | protonema |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF646473 | 0.0 | EF646473.1 Physcomitrella patens DELLA protein (DELLAb) gene, complete cds. | |||
GenBank | EU262751 | 0.0 | EU262751.1 Physcomitrella patens DELLA-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024361039.1 | 0.0 | DELLA protein GAI-like | ||||
Swissprot | Q8S4W7 | 1e-154 | GAI1_VITVI; DELLA protein GAI1 | ||||
TrEMBL | A7U4T7 | 0.0 | A7U4T7_PHYPA; DELLA protein | ||||
STRING | PP1S12_244V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 1e-150 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c22_7230V3.4.p |
Entrez Gene | 5917448 |
Publications ? help Back to Top | |||
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