PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c22_23130V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 296aa MW: 35584.6 Da PI: 6.2407

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c22_23130V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68	2e-21	44	114	1	71
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 +W +e+++ i++r e+e+++ +k++k+lWe + +kmre+gf+rs+ qCk+kw+nl +ryk +++e + Pp3c22_23130V3.1.p 44 QWGYHETKEFIAIRAELEKDFTLTKRNKTLWELIERKMREKGFRRSADQCKCKWKNLVNRYKGKETSEPDY 114 7*************************************************************999988653 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.853	37	101	IPR017877	Myb-like domain
CDD	cd12203	5.70E-26	44	108	No hit	No description
Pfam	PF13837	1.0E-18	44	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MGENLGAMPM SMSLQGAHDM SHTDLGSLTP VRGRGLKKED RIAQWGYHET KEFIAIRAEL 60 EKDFTLTKRN KTLWELIERK MREKGFRRSA DQCKCKWKNL VNRYKGKETS EPDYEFSQGK 120 DLFDPENGRP CPFFDELDAV FKERARNSER NLQESEPGSR AKKKGKRGKV KSEDDDDSED 180 EDDEEESEED RVVQRKKRKG EKDTNRPRVT AEKYRANSMQ EVLEEFFQQQ QKVEEQWRES 240 VERREQERRW REQEWRDAME KLEQERIARE QMWREHEEQR RIRGEARALK RDELFA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.17731	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024360042.1	0.0	trihelix transcription factor GT-3b-like, partial
TrEMBL	A0A2K1IPE5	0.0	A0A2K1IPE5_PHYPA; Uncharacterized protein (Fragment)
STRING	PP1S100_120V6.1	1e-175	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2262	15	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	3e-28	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c22_23130V3.1.p