PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_2200V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 775aa    MW: 84414.5 Da    PI: 5.7184
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_2200V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018159181123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C++C++ F +  +L+ H + H
  Pp3c22_2200V3.5.p 159 YRCGICNEDFESAKSLNLHKKFH 181
                        9*******************998 PP
2zf-C2H215.16.5e-05230249221
                        EETTTTEEESSHHHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                        +C+ Cgk Fs++  L  H+r
  Pp3c22_2200V3.5.p 230 PCTECGKEFSSWKALFGHMR 249
                        5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.013159183IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93159181IPR007087Zinc finger, C2H2
SuperFamilySSF576675.54E-9159181No hitNo description
SMARTSM003550.021159181IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
SuperFamilySSF576675.54E-9224251No hitNo description
PROSITE profilePS5015710.18229256IPR007087Zinc finger, C2H2
SMARTSM003550.0052229251IPR015880Zinc finger, C2H2-like
PfamPF139124.5E-8231253IPR007087Zinc finger, C2H2
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-4231251IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.2E-8488512IPR007087Zinc finger, C2H2
SuperFamilySSF576671.28E-6488510No hitNo description
PROSITE profilePS501579.93488515IPR007087Zinc finger, C2H2
SMARTSM003550.61488510IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280490510IPR007087Zinc finger, C2H2
SuperFamilySSF576671.28E-6582609No hitNo description
PfamPF139124.7E-13586611IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494587614IPR007087Zinc finger, C2H2
SMARTSM003550.43587609IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280589609IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MDIEPLETDK ERAERENIDV VKAELGELIE RESGTEDYGH QAEVSSSRGN VSVTNQDSES  60
LIHEGSLDRP LSRPRRSHGL RKLNTAKTRS SSLSSQRSGK CSPSQDLLSG ATPDSKGTRK  120
RGEDAEEVRQ FSSSEELNGD GDRERDGDGD GDEVDGTGYR CGICNEDFES AKSLNLHKKF  180
HPQYTLRRNP KRSRKLMDQE FTVDVGAAVP VQASAPTKKT SSMSEEFPKP CTECGKEFSS  240
WKALFGHMRC HPEREWRGIQ PPSEKNNPGG QGSGPHAAGG VGNHTNFRRK KPSPVAQLPP  300
PLAPPPVVTH PDDVNEKSGS FDSRRAFVAG KASDNESDTE SIEAAYMSNG DRHTVMGWQT  360
GKRSKRSRQT HRSLDAVNSA KKELSNCRDS AANMAESNDM IEALMLLQAA NRSRERLTVT  420
STPESHGSKS RSKSITPESG LEAGTEEILQ RERKTKMETE AVSLCGDTED GADEFDAGEQ  480
GSCARSKYEC ATCKRQFKSH QALGGHRASH KKVKGCFART NVNDGGANEQ SLESMDADDE  540
EFLKSEEQFP NDFQETSHNS EEDKSCYLTT ARDDEEALYA ARKAKAHECS ICHRVFNSGQ  600
ALGGHKRCHW GGSGSGSLGA NEVMSAKPVQ AGQQQQSSSR PLKESVLDLN LPAPECVEEE  660
EIAQQQEGEA GAAPMNYMPV PSLNFFNIIN NPGRSAYGDA VGQQGQGQQQ QQHAAFLQGE  720
ESSSNNQVEN RMEGINQFTS FERACGPLDT ITAHPKPHVV ATMALVPGLT PTSA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.2951e-148protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360931.10.0zinc finger protein 646-like isoform X3
TrEMBLA0A2K1ILZ00.0A0A2K1ILZ0_PHYPA; Uncharacterized protein
STRINGPP1S162_50V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-21C2H2-like zinc finger protein