PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_2200V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 835aa    MW: 90829.2 Da    PI: 5.1331
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_2200V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002219241123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C++C++ F +  +L+ H + H
  Pp3c22_2200V3.4.p 219 YRCGICNEDFESAKSLNLHKKFH 241
                        9*******************998 PP
2zf-C2H2157.1e-05290309221
                        EETTTTEEESSHHHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                        +C+ Cgk Fs++  L  H+r
  Pp3c22_2200V3.4.p 290 PCTECGKEFSSWKALFGHMR 309
                        5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.014219243IPR007087Zinc finger, C2H2
SMARTSM003550.021219241IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93219241IPR007087Zinc finger, C2H2
SuperFamilySSF576676.2E-9219241No hitNo description
PROSITE patternPS000280221241IPR007087Zinc finger, C2H2
SuperFamilySSF576676.2E-9284311No hitNo description
SMARTSM003550.0052289311IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18289316IPR007087Zinc finger, C2H2
PfamPF139124.9E-8291313IPR007087Zinc finger, C2H2
PROSITE patternPS000280291311IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-4291311IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.5E-8548572IPR007087Zinc finger, C2H2
SMARTSM003550.61548570IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.4E-6548570No hitNo description
PROSITE profilePS501579.93548575IPR007087Zinc finger, C2H2
PROSITE patternPS000280550570IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-6642669No hitNo description
PfamPF139125.1E-13646671IPR007087Zinc finger, C2H2
SMARTSM003550.43647669IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.494647674IPR007087Zinc finger, C2H2
PROSITE patternPS000280649669IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MTLADGEESV DMEEKALEKA DRELDCVEMS TDQVSRGTDQ ERGMDLEQEE RRGAISVSDN  60
ARNSDPSAAC KTKEEEDFGV SVGELGELIE RESGTEDYGH QAEVSSSRGN VSVTNQDSES  120
LIHEGSLDRP LSRPRRSHGL RKLNTAKTRS SSLSSQRSGK CSPSQDLLSG ATPDSKGTRK  180
RGEDAEEVRQ FSSSEELNGD GDRERDGDGD GDEVDGTGYR CGICNEDFES AKSLNLHKKF  240
HPQYTLRRNP KRSRKLMDQE FTVDVGAAVP VQASAPTKKT SSMSEEFPKP CTECGKEFSS  300
WKALFGHMRC HPEREWRGIQ PPSEKNNPGG QGSGPHAAGG VGNHTNFRRK KPSPVAQLPP  360
PLAPPPVVTH PDDVNEKSGS FDSRRAFVAG KASDNESDTE SIEAAYMSNG DRHTVMGWQT  420
GKRSKRSRQT HRSLDAVNSA KKELSNCRDS AANMAESNDM IEALMLLQAA NRSRERLTVT  480
STPESHGSKS RSKSITPESG LEAGTEEILQ RERKTKMETE AVSLCGDTED GADEFDAGEQ  540
GSCARSKYEC ATCKRQFKSH QALGGHRASH KKVKGCFART NVNDGGANEQ SLESMDADDE  600
EFLKSEEQFP NDFQETSHNS EEDKSCYLTT ARDDEEALYA ARKAKAHECS ICHRVFNSGQ  660
ALGGHKRCHW GGSGSGSLGA NEVMSAKPVQ AGQQQQSSSR PLKESVLDLN LPAPECVEEE  720
EIAQQQEGEA GAAPMNYMPV PSLNFFNIIN NPGRSAYGDA VGQQGQGQQQ QQHAAFLQGE  780
ESSSNNQVEN RMEGINQFTS FERACGPLDT ITAHPKPHVV ATMALVPGLT PTSA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.2951e-148protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360932.10.0zinc finger protein 646-like isoform X4
TrEMBLA0A2K1ILZ00.0A0A2K1ILZ0_PHYPA; Uncharacterized protein
STRINGPP1S162_50V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-21C2H2-like zinc finger protein