PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c22_15410V3.2.p

Common Name

PHYPADRAFT_233091

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 334aa MW: 37854.1 Da PI: 6.233

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c22_15410V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.3	4.7e-14	85	168	2	80
trihelix 2 WtkqevlaLiearremeerlrrg.....klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 W +e l L +a+re+ +r +rg + ++ +W ++ +++++ g++rs++qC +kwe +++ ykk+ ++ek ++++s + Pp3c22_15410V3.2.p 85 WVVEEMLILQAAKREDLHRHERGmkgsqNPAQERWNWIEDYCWASGVQRSAQQCHDKWEVISTAYKKVYTNEKYSCNGHKSYWN 168 999*********9999999854443368899***********************************99987666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.0E-9	83	169	No hit	No description

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MELHGGEFRA DISLVDAHHS PNEGDEAHMS DRDHILHDSN GSHVNGDSHL IDATNHHSLV 60 ALDEEVVYGH PQGSRCGRIY KKSNWVVEEM LILQAAKRED LHRHERGMKG SQNPAQERWN 120 WIEDYCWASG VQRSAQQCHD KWEVISTAYK KVYTNEKYSC NGHKSYWNMS PEERKRNKLP 180 PNFQKEIFNA LLEWCNTKTK NSDSGELVVD TSGPLGPSGV KADLVDSEDE SEEETSGPNH 240 SGKKRKVWSK TDEALAMILV RNNKNVVEAM LESEDRKDKR HREDLEMERV KLELEKEKFR 300 GTMKLGSGYI DALVNIGDGL KQLSAALCAN IHS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.1051	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024360656.1	0.0	uncharacterized protein LOC112274983
TrEMBL	A9SET4	0.0	A9SET4_PHYPA; Predicted protein
STRING	PP1S71_167V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-23	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c22_15410V3.2.p
Entrez Gene	5928035

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]