PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_12880V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 481aa    MW: 52767.8 Da    PI: 4.8942
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_12880V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30312370159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK vk+s++pr+YYrC++++Cpv+k+ver+ edp +v + Yeg+H h+
  Pp3c22_12880V3.1.p 312 LDDGYKWRKYGQKAVKNSPHPRNYYRCATPNCPVRKRVERCIEDPGLVATAYEGTHSHQ 370
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-32298372IPR003657WRKY domain
SuperFamilySSF1182902.48E-28305372IPR003657WRKY domain
PROSITE profilePS5081129.528307372IPR003657WRKY domain
SMARTSM007741.2E-35312371IPR003657WRKY domain
PfamPF031064.0E-24313370IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MEGSTHPVQQ VGLNKDVEID YSQRIMHSLT DSHAVPSQLS QTVSGDGSSF HGFYDSYGRI  60
PDISPGLNPW SFISPPPELR CLLPSVSSES EPSWETASLN QREALADFSW FTEDIVMQRR  120
INSSEVTSPR FSNIKTSDEV GVTTRGSQDN LSDVCASTCP LDKPTYQVAW AQSVLELQAF  180
EGSYEHDGDH LESPKAERHV SSSTCTDAQL LADRSHSGTP ITSESLSSSL VSDGKTESKT  240
RKRKTEACSR DAAETSGQSE KRVRSHEGDE EDGDGVEEDA EEDARSGDQE TKEPIVPEPR  300
YAIKTRADTD VLDDGYKWRK YGQKAVKNSP HPRNYYRCAT PNCPVRKRVE RCIEDPGLVA  360
TAYEGTHSHQ FPSFLRCPPG YPGGLPGLLA TLSHHYSMAS NPALEPSFSK QQGGFHLDYN  420
SLISGAAAFA PEQPFVPRPE YLNRSFTAHS AALSRELSVS TDEGLSEDML RPTNPTTSRA  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-25302373778Probable WRKY transcription factor 4
2lex_A3e-25302373778Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239244TRKRKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403674.11e-118uncharacterized protein LOC112295882
TrEMBLA0A2K1INA20.0A0A2K1INA2_PHYPA; Uncharacterized protein
STRINGPP1S244_78V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.14e-31WRKY family protein