PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_11290V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 457aa    MW: 50446.8 Da    PI: 7.3081
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_11290V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.77.7e-12280374395
                         EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS....-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg....rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                         k+l+ sdv+++gr++lpk+ ae             k+++l d +     + W+++++   ++ks++yvl+ ++ +F k ++Lk+ D +v +
  Pp3c22_11290V3.4.p 280 KELSVSDVGELGRIILPKRDAEGRlphiA-----MKEIKLLDMRDystpKCWSFRYKGwiNNKSRMYVLE-NTGGFIKYHNLKVHDGFVVY 364
                         78899****************76665332.....445665555555558*******7668999999*999.***************99999 PP

                         E-SSSEE..EEE CS
                  B3  84 ldgrsefelvvk 95 
                           ++ +++lvv 
  Pp3c22_11290V3.4.p 365 --EDGSGKLVVC 374
                         ..5578878876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-15277379IPR015300DNA-binding pseudobarrel domain
CDDcd100175.45E-15277374No hitNo description
SMARTSM010194.0E-8278379IPR003340B3 DNA binding domain
SuperFamilySSF1019362.49E-13278375IPR015300DNA-binding pseudobarrel domain
PfamPF023627.6E-9280374IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDVVNGKIVS VRTERSEMWS ALKPSGSRVL DVGGGECEQL FPCNSFGTSW NRTPCAPRTG  60
GLNSFRHHNI WGALSTQGHG VPCSAGLEPQ TMGKWTRFSP DFRGTFHKPQ PAASGRELST  120
SNHERGLLVD DHRWGWNPTR AVDQHLPDLN QSSCSEPSLF DHEMVMFESQ ITRRVSSHLL  180
KSSPTRCAPP VVPETSLPPG SPHEVVEKGS VSSTDLNKDS SMECSAARIS FEEACEMQSR  240
PTSTLISNSS DLKRKILDPS RNDQEWDCGW IWPLKILIRK ELSVSDVGEL GRIILPKRDA  300
EGRLPHIAMK EIKLLDMRDY STPKCWSFRY KGWINNKSRM YVLENTGGFI KYHNLKVHDG  360
FVVYEDGSGK LVVCGQKKNT TRSDCSVGLP RDNTLCESDT FSKKPFISGE GGSNCVNAIT  420
TISLATVSTN PSSGVDSGMN YSGVPILTEE PEPFHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A2e-292743719106B3 domain-containing transcription factor LEC2
6j9c_D2e-292743719106B3 domain-containing transcription factor LEC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360522.10.0uncharacterized protein LOC112274902
TrEMBLA9SUM70.0A9SUM7_PHYPA; Predicted protein
STRINGPP1S121_3V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.12e-29B3 family protein