PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c21_18170V3.5.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 335aa MW: 37674.9 Da PI: 6.5604

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c21_18170V3.5.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.6	1.8e-14	86	169	2	80
trihelix 2 WtkqevlaLiearremeerlrrg.....klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 W +e l L +a+re+ +r +r+ + ++ +W ++ +++++ g++rs++qC +kwe +++ ykk+ ++ek ++++s + Pp3c21_18170V3.5.p 86 WVVEEMLILQAAKREDLHRHERSgkgsqNPAQERWNWIEDYCWASGLQRSAQQCHDKWEVISTAYKKVYNNEKHACNGHKSYWN 169 999*********9988888743333358899*************************************988777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.1E-9	84	170	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MDLHHGGEYR RELSLVDPTH SSHEGDEAHL SDPDQILHES NGSHANGNSH LIDAGNHQSL 60 LALEDAVVYG HPQGSRCGRI YKKSNWVVEE MLILQAAKRE DLHRHERSGK GSQNPAQERW 120 NWIEDYCWAS GLQRSAQQCH DKWEVISTAY KKVYNNEKHA CNGHKSYWNM TPEERKRNKL 180 PPNFQKEIFN ALLEWSNTKT RNSDSGELVV DTSGPLGPSG VKAELVDSDD ESGEETSGPH 240 LSGKKRKLLS RADEALASIL VRNNKNVVEA MLESEDRKDK RHREDLEMER VKLELEKEKF 300 RGAMKLGSGY IDALVNIGDG LKQLSAALCA NIRS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024359023.1	0.0	uncharacterized protein LOC112274093
Refseq	XP_024359024.1	0.0	uncharacterized protein LOC112274093
Refseq	XP_024359025.1	0.0	uncharacterized protein LOC112274093
TrEMBL	A0A2K1ISG1	0.0	A0A2K1ISG1_PHYPA; Uncharacterized protein
STRING	PP1S85_93V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-23	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c21_18170V3.5.p