PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c21_18170V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Trihelix | ||||||||
Protein Properties | Length: 335aa MW: 37674.9 Da PI: 6.5604 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 45.6 | 1.8e-14 | 86 | 169 | 2 | 80 |
trihelix 2 WtkqevlaLiearremeerlrrg.....klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 W +e l L +a+re+ +r +r+ + ++ +W ++ +++++ g++rs++qC +kwe +++ ykk+ ++ek ++++s + Pp3c21_18170V3.1.p 86 WVVEEMLILQAAKREDLHRHERSgkgsqNPAQERWNWIEDYCWASGLQRSAQQCHDKWEVISTAYKKVYNNEKHACNGHKSYWN 169 999***********9988888743333358899***************************************988777776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.1E-9 | 84 | 170 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MDLHHGGEYR RELSLVDPTH SSHEGDEAHL SDPDQILHES NGSHANGNSH LIDAGNHQSL 60 LALEDAVVYG HPQGSRCGRI YKKSNWVVEE MLILQAAKRE DLHRHERSGK GSQNPAQERW 120 NWIEDYCWAS GLQRSAQQCH DKWEVISTAY KKVYNNEKHA CNGHKSYWNM TPEERKRNKL 180 PPNFQKEIFN ALLEWSNTKT RNSDSGELVV DTSGPLGPSG VKAELVDSDD ESGEETSGPH 240 LSGKKRKLLS RADEALASIL VRNNKNVVEA MLESEDRKDK RHREDLEMER VKLELEKEKF 300 RGAMKLGSGY IDALVNIGDG LKQLSAALCA NIRS* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024359023.1 | 0.0 | uncharacterized protein LOC112274093 | ||||
Refseq | XP_024359024.1 | 0.0 | uncharacterized protein LOC112274093 | ||||
Refseq | XP_024359025.1 | 0.0 | uncharacterized protein LOC112274093 | ||||
TrEMBL | A0A2K1ISG1 | 0.0 | A0A2K1ISG1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S85_93V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1881 | 16 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 6e-23 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c21_18170V3.1.p |