PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c21_16540V3.2.p | ||||||||
Common Name | PHYPADRAFT_172697 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 21543.5 Da PI: 7.9554 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.2 | 2.1e-13 | 101 | 142 | 3 | 47 |
AP2 3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaai 47 y+GVr ++ ++Wv eIr ++++++lg++ taeeAa+a++ Pp3c21_16540V3.2.p 101 YRGVRHRPELNKWVTEIRP----TaQKRKIWLGTYKTAEEAARAYD 142 9***************999....3346******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 16.476 | 100 | 164 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.2E-17 | 100 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-14 | 101 | 159 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.2E-5 | 101 | 112 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-22 | 101 | 159 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-9 | 101 | 142 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.63E-18 | 101 | 159 | No hit | No description |
PRINTS | PR00367 | 2.2E-5 | 124 | 140 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MPGMAPAAWC LGGVKLERLE STEMKKSIGV HKIRKDMEDR DIDLNVPYME EKQEQEQEST 60 SVSASVSASS TSAGTDGKSC RVPCDEVHYR GVSGREEEVA YRGVRHRPEL NKWVTEIRPT 120 AQKRKIWLGT YKTAEEAARA YDVGIFYTGK KIPLNFPDSM ENLPELPCGS WEEIAPFVKK 180 QAVSAAKRHR GL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.10455 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024359180.1 | 1e-139 | dehydration-responsive element-binding protein 1F-like | ||||
TrEMBL | A0A2K1IS96 | 1e-141 | A0A2K1IS96_PHYPA; Uncharacterized protein | ||||
STRING | PP1S373_18V6.1 | 1e-141 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 2e-16 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c21_16540V3.2.p |
Entrez Gene | 5946889 |
Publications ? help Back to Top | |||
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