PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_1210V3.1.p
Common NamePHYPADRAFT_90023
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 560aa    MW: 60872.3 Da    PI: 7.3974
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_1210V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038267291123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        +kC+   C+k+F+++ ++k H +tH
  Pp3c21_1210V3.1.p 267 FKCQheGCNKTFKNPQTMKMHHKTH 291
                        89**********************9 PP
2zf-C2H2140.00015322340220
                        EETTTTEEESSHHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                        +Cp+C+k+F   ++L+rH 
  Pp3c21_1210V3.1.p 322 RCPKCKKTFVGLYELRRHF 340
                        7*****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.1E-7263292No hitNo description
Gene3DG3DSA:3.30.160.604.8E-9265294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.887267296IPR007087Zinc finger, C2H2
SMARTSM003550.0027267291IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280269291IPR007087Zinc finger, C2H2
SuperFamilySSF576675.5E-7321371No hitNo description
PROSITE profilePS501579.224321350IPR007087Zinc finger, C2H2
SMARTSM003550.23321344IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.6E-4322356IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280323344IPR007087Zinc finger, C2H2
SMARTSM00355180351371IPR015880Zinc finger, C2H2-like
SMARTSM00355210377398IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MAVTATPALS TFYGTEAANI LQPLTFSGNH GLMANDVVPL SLGSMLTMGG TSLYNYGDNA  60
AFASPWDSYF TRDSSIFNLP NTLSPSLSFS DSSVYSTEES DLLLLNSDSD DFFQQIHGCS  120
PISATSSISA SSSISTMHPN LVNTLKNMVA PGSAGSSVAQ GVSIFGDAQA PLLDRQLLPQ  180
VQVENHLQDR SQLDSIYGFR NALPRQSQQS VVVPKVELQD LPSSVGVVVS TPADSNLDSV  240
KAVEKSESED IEAAVVSVDL IQNRRPFKCQ HEGCNKTFKN PQTMKMHHKT HYSDGSAASK  300
TCTLPTLTSS LKAGHNKKIP SRCPKCKKTF VGLYELRRHF GRKHSEGEKP FGCRKCGKKF  360
YIEVDVRDHE KLCGEPIECK CGLKFAFKCN LVAHKKAHPA CQDQQPNCSS STTSNNQSSS  420
DDSDHSPGIS RYSQTSGIKR AREESTSPIQ SSLHVPVPDF TGIPDAPLFK TARHAFPGSS  480
FHSETSPLWT SNMLYPPISF SNLPLPSAYT NLDCLQDRLR FNPQHFSTKS LPIPSTYAEA  540
VNCEMGIAHN QLPFKAWSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358686.10.0zinc finger protein 184-like
TrEMBLA9TA080.0A9TA08_PHYPA; Predicted protein
STRINGPP1S191_100V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1095648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.12e-13WIP domain protein 5
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]