PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_11010V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ZF-HD
Protein Properties Length: 341aa    MW: 36269 Da    PI: 8.8285
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_11010V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.62.7e-32133189360
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                         ++rY+eC+kNhAas+Ggha+DGCgEfmp  g+egt+ al+CaAC+CHRnFHRreve e
  Pp3c21_11010V3.1.p 133 AFRYRECQKNHAASIGGHALDGCGEFMPG-GQEGTVGALRCAACDCHRNFHRREVEGE 189
                         689*************************9.999*********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-42122201IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.7E-29134186IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.0E-30135186IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.541136185IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.33E-18263338IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-30269339IPR009057Homeodomain-like
TIGRFAMsTIGR015651.9E-24277333IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDLGSGRDGT DQQQQQQRGP HQTQQQQQQL PQPQPLASLP TSIPLLLPPA LAVSNYHPTP  60
VSVQPQHQQH HEMPGAAKPK LLNTPSGNGG SVQSKSDHVA ADQAREIVRQ AVQVAGAASE  120
SASAKLSNVK KGAFRYRECQ KNHAASIGGH ALDGCGEFMP GGQEGTVGAL RCAACDCHRN  180
FHRREVEGEV LCECKRKPKP GMQLGAGIVT PHQLPGGTNT STPMGALALP PSAGAMTPLT  240
TAALSAGGLT DSDEQDDGLG NSAGGMMISM RSPSAIKKRF RTKFSTEQKD QMCAFAEELG  300
WRIQKHDEAA VQEFCTTVGV KRHVLKVWMH NNKHTVGKKP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-252783351875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.96170.0protonema
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0994280.0DQ099428.1 Physcomitrella patens zinc finger homeodomain protein 1 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024359538.10.0zinc-finger homeodomain protein 1-like
RefseqXP_024359539.10.0zinc-finger homeodomain protein 1-like
SwissprotA2Z2597e-61ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH55e-61ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLQ4F9440.0Q4F944_PHYPA; Zinc finger homeodomain protein 1
STRINGPP1S235_100V6.20.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-58homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Hu W,dePamphilis CW,Ma H
    Phylogenetic analysis of the plant-specific zinc finger-homeobox and mini zinc finger gene families.
    J Integr Plant Biol, 2008. 50(8): p. 1031-45
    [PMID:18713354]