PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c20_23720V3.1.p | ||||||||
Common Name | PHYPADRAFT_146252 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 66aa MW: 8093.27 Da PI: 9.1314 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3e-09 | 1 | 48 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +W+ E ell++ v+++G+g+Wk+I + + + ++k++w+++ Pp3c20_23720V3.1.p 1 KWSNKEVELLKQQVHEHGKGHWKKILKDNAdafCRQIEVDLKDKWRNF 48 7*************************9988888667889999999987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-9 | 1 | 48 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.8E-12 | 1 | 55 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 4.06E-10 | 1 | 50 | No hit | No description |
Pfam | PF00249 | 7.2E-7 | 1 | 47 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.243 | 1 | 53 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 66 aa Download sequence Send to blast |
KWSNKEVELL KQQVHEHGKG HWKKILKDNA DAFCRQIEVD LKDKWRNFEK YNKLWDFLEL 60 PQYLH* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024390656.1 | 3e-14 | uncharacterized protein LOC112289582 isoform X1 | ||||
TrEMBL | A0A2K1IWC4 | 2e-39 | A0A2K1IWC4_PHYPA; Uncharacterized protein (Fragment) | ||||
TrEMBL | A9TIV8 | 2e-39 | A9TIV8_PHYPA; Predicted protein (Fragment) | ||||
STRING | PP1S966_1V6.1 | 3e-20 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72740.1 | 7e-10 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c20_23720V3.1.p |
Entrez Gene | 5941804 |
Publications ? help Back to Top | |||
---|---|---|---|
|