PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c20_22630V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

GATA

Protein Properties

Length: 478aa MW: 51977.9 Da PI: 6.4406

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c20_22630V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	52.4	7e-17	292	326	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C+t Tp+WR gp g+ktLCnaCG++y++ +l Pp3c20_22630V3.1.p 292 CMHCQTQRTPQWRTGPMGPKTLCNACGVRYKSGRL 326 99*****************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	11.424	286	322	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	5.4E-14	286	323	IPR013088	Zinc finger, NHR/GATA-type
SMART	SM00401	9.6E-14	286	336	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.14E-14	287	349	No hit	No description
CDD	cd00202	1.10E-12	291	338	No hit	No description
Pfam	PF00320	1.3E-14	292	326	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	292	317	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MVSPYMVAGP FGSYGLPEID KPSIPEVFHI DDLLDFSCDD IGGPILGGHL PLSGVTTESS 60 MIGGETSISS SPIEAKNETL EPALEDIEVK TDLCVPCDDL ADLEWLSSFV EDSFTVVNTP 120 EVFSTYGGFP SALGNGDRTP TMKLSDSYQP YQKLSPTSVL ETSATSSELT SPDYRDVCVP 180 GRARSKRSRT GAKIWTSRIL STSSSVNSLE SMGADSYAMS YNPIVSSSDG CGDSTVDVVE 240 QDDEDSQGSK RYKVTNDGHS QSESKDNISA NFHSNASKGR KKNQDNSQPW RCMHCQTQRT 300 PQWRTGPMGP KTLCNACGVR YKSGRLLPEY RPAGSPTYVA SKHSHSHKKV LEMRRERELR 360 IQQTGGHGVQ QQQSMHGATP LREKTNNQKV AGAKSSSGEH VKSEYGGGYG SKNLETMQKS 420 FSKPMEMPRP GKPEMMKYAS KASGMEFAKC LTSTTAVLGS RLEFGLDDNS MREMRGL*

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MVSPYMVAGP FGSYGLPEID KPSIPEVFHI DDLLDFSCDD IGGPILGGHL PLSGVTTESS  60
MIGGETSISS SPIEAKNETL EPALEDIEVK TDLCVPCDDL ADLEWLSSFV EDSFTVVNTP  120
EVFSTYGGFP SALGNGDRTP TMKLSDSYQP YQKLSPTSVL ETSATSSELT SPDYRDVCVP  180
GRARSKRSRT GAKIWTSRIL STSSSVNSLE SMGADSYAMS YNPIVSSSDG CGDSTVDVVE  240
QDDEDSQGSK RYKVTNDGHS QSESKDNISA NFHSNASKGR KKNQDNSQPW RCMHCQTQRT  300
PQWRTGPMGP KTLCNACGVR YKSGRLLPEY RPAGSPTYVA SKHSHSHKKV LEMRRERELR  360
IQQTGGHGVQ QQQSMHGATP LREKTNNQKV AGAKSSSGEH VKSEYGGGYG SKNLETMQKS  420
FSKPMEMPRP GKPEMMKYAS KASGMEFAKC LTSTTAVLGS RLEFGLDDNS MREMRGL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024358213.1	0.0	GATA transcription factor 9-like
TrEMBL	A0A2K1IW58	0.0	A0A2K1IW58_PHYPA; Uncharacterized protein
STRING	PP1S241_7V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP68	17	287

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	3e-37	GATA transcription factor 9

Link Out ? help Back to Top
Phytozome	Pp3c20_22630V3.1.p