PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c20_14750V3.2.p

Common Name

PHYPADRAFT_172615

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 285aa MW: 32901.1 Da PI: 9.5763

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c20_14750V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00045	113	136	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+k F+++ L H + H Pp3c20_14750V3.2.p 113 WQCGYCKKIFRNQGFLDLHFDNrH 136 58************9999976655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	6	1	35	No hit	No description
PROSITE profile	PS50157	8.559	113	141	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	115	136	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0046872	Molecular Function	metal ion binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MSSRREAMTK TCWDLRAHVL ISLALVLCLS SFTACADKFR VSEERQRQLQ EEKGRVHCSR 60 SRSRTVRAIV SEYLMPFVKD QKYTLPKTCR LHPDNDVYHE QEENMIELRP MQWQCGYCKK 120 IFRNQGFLDL HFDNRHSEKL EPSSNSCLAD ACGALHCDYY NSLSSKPQIQ ATCKLAVVEK 180 NRHSCEVLAN TCFPADHSPA AQRLNHFFKR QFCDAHTCKK KLKIFPSGSG INRNKSLIYA 240 LTLFTVIVLA IFYAILYLIK RDTNLLRKGL RRASFRPPCK VQKE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.15579	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024357038.1	0.0	uncharacterized protein LOC112272993
TrEMBL	A9TY40	0.0	A9TY40_PHYPA; Predicted protein
STRING	PP1S368_21V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP4846	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	2e-64	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Pp3c20_14750V3.2.p
Entrez Gene	5946736

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]