PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_26600V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 362aa    MW: 40963.4 Da    PI: 8.3064
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_26600V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.44e-16135234198
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        f+k+l  sdv+++gr++lpkk ae+h   +  +e++t++l+d  +g+ W+ +++y  ++ks++y+l+    +Fv+ ++L+egD ++ +  ++
  Pp3c1_26600V3.3.p 135 FQKELRASDVSSLGRIILPKKDAERHlpFLAVREGITMSLMDyHTGQYWTARYRYwpNNKSRMYLLE-KIGSFVSFHKLEEGDLLLCY--RN 223
                        99**************************66677999******8899*********877777778777.8****************999..56 PP

                        SEE..EEEEE- CS
                 B3  88 sefelvvkvfr 98 
                         ++ +v++ +r
  Pp3c1_26600V3.3.p 224 PQGAYVIRGRR 234
                        77777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.07E-20133227IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-24133240IPR015300DNA-binding pseudobarrel domain
CDDcd100174.58E-20133218No hitNo description
PfamPF023621.1E-12135221IPR003340B3 DNA binding domain
SMARTSM010193.4E-15135236IPR003340B3 DNA binding domain
PROSITE profilePS508639.375135236IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MLMQYIRCAP EGQRSELVAA TMMQGMECWG TTPPPKWHYN PNSSTNLAQM NAPQFHPPWN  60
GNWGDRADLV GTGDVPNKAT AYSRALRKSC LLNQRGYLKA RRNRSDSADK LRHHQSRQRR  120
AMSNLECCQG FQFLFQKELR ASDVSSLGRI ILPKKDAERH LPFLAVREGI TMSLMDYHTG  180
QYWTARYRYW PNNKSRMYLL EKIGSFVSFH KLEEGDLLLC YRNPQGAYVI RGRRVAAEAM  240
SSPRREPSPD RAQAKETATR PVVLESYKDE CNSTGSSDAS NPSFDTPDSA LEELLSGKDV  300
SDCMSGLQDF LDGDLGITRD WQGEKLGGSL VRSFQPPLLD LDFDPVEGML CMPNVKQRYM  360
D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A4e-311322382109B3 domain-containing transcription factor FUS3
6j9b_D4e-311322382109B3 domain-containing transcription factor FUS3
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.16000.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389244.10.0uncharacterized protein LOC112288836 isoform X1
RefseqXP_024389252.10.0uncharacterized protein LOC112288836 isoform X1
RefseqXP_024389262.10.0uncharacterized protein LOC112288836 isoform X1
RefseqXP_024394984.10.0uncharacterized protein LOC112291592 isoform X1
TrEMBLA0A2K1L9T40.0A0A2K1L9T4_PHYPA; Uncharacterized protein
STRINGPP1S21_125V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-34B3 family protein