PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_20290V3.1.p
Common NamePHYPADRAFT_162478
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 523aa    MW: 55107.9 Da    PI: 6.4078
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_20290V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.71.1e-09158183127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ykt+lC++f+  G C+y  +C+FaHg+
  Pp3c1_20290V3.1.p 158 YKTKLCSRFRS-GNCPYSTNCNFAHGM 183
                        9********99.*************95 PP
2zf-CCCH29.11.7e-09231255226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        kt++C+ ++  G C+yG++C+F H+
  Pp3c1_20290V3.1.p 231 KTRPCKKYFGEGNCPYGEKCNFLHD 255
                        8***********************7 PP
3zf-CCCH37.54e-12320345126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt+lC+ +  tG+C++ d+C+FaHg
  Pp3c1_20290V3.1.p 320 WKTRLCNKWETTGHCPFEDKCHFAHG 345
                        8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-8156188IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6157183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-15157190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.925157184IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7158183IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-7228258IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-10229257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309229257IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-4231256IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-7231255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-17315350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-9317350IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-8319346IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131319347IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9320345IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MDTTAAAELG MGEPVVGMDG AGFWDAGAPG LDQWGDNEDD ESVENDLSWD RAGPHGSAAV  60
AQEYQQASHS GFGRGRAISG AEPTQKVLRT MPDGNRGPNH HNHSGNHQGF GGHGGGIQSG  120
RGGSAAGGAG LADFGAVGSS SAGAGAVGRG RGMGSIFYKT KLCSRFRSGN CPYSTNCNFA  180
HGMEELRKPP PGWEEFVASQ EFPPPPPSQP GGQGGSGSAA GSTDSQVRFH KTRPCKKYFG  240
EGNCPYGEKC NFLHDEHSVP RAVREARDAA VAAASGAVVA ASPKVEMQLA PTTNGNTKEG  300
EGGSSTPAGS ATPNARPSNW KTRLCNKWET TGHCPFEDKC HFAHGSDELQ RYGGGLPDSS  360
APALSDSKSG GTPSQDTVAV SSYQRHQGGA SSARSGSKGK SNWRGPNEIS TIYGDWWIED  420
DDWQRGATTT IHEAAEPESD VRGEVQRRTT FSVPSASTPK TVPFFRRSTG LEPSRQQNFT  480
PINRCAIVAQ MDGEVNQQSF QYEGVKEDVY GSVLQPEQGW RR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375302.10.0zinc finger CCCH domain-containing protein 56-like isoform X1
TrEMBLA0A2K1L8W40.0A0A2K1L8W4_PHYPA; Uncharacterized protein
TrEMBLA9S2M60.0A9S2M6_PHYPA; Predicted protein
STRINGPP1S43_233V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.14e-47C3H family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]