PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c1_15680V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

GRAS

Protein Properties

Length: 770aa MW: 84295.9 Da PI: 6.7861

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c1_15680V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	434.7	6.9e-133	407	767	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 lv+lLl+cA+a+s+++ e a++ L++l +as gd+mqR+aa+fteALaar++++ + yk l ++ ++ l+a++++++++P+++ Pp3c1_15680V3.1.p 407 LVHLLLACADAISKNKIEIATQKLEELYSHASLFGDSMQRIAAFFTEALAARIVGKDNPAYKNLMLQSH----LDDYLSAFTTLYKICPYFQ 494 68***************************************************99999998876665....79************* PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 f+h+taNqaIleaveg + vHiiD+d++qG+QWp ++q+L++R++gpp+l+iTgvg s ++l+ tg+rLa fAe+ gvpfef++ v+ Pp3c1_15680V3.1.p 495 FGHFTANQAILEAVEGYSVVHIIDMDLMQGFQWPGFIQSLSEREGGPPKLKITGVGT----SCTSLQDTGRRLAAFAETYGVPFEFHA-VVG 581 *****************************************************....9**********************.799 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 +ledl++ eL kpgEa+aVn+v+qlhrll++ +l++ +++ ++s+ P ++++veqea+hn++sF+ rf+eal+yy+a+fdsl+++lp Pp3c1_15680V3.1.p 582 ELEDLSPMELGAKPGEAVAVNCVMQLHRLLNNGDKLQN----FISGLRSIHPVMLTLVEQEANHNTSSFMGRFVEALHYYAAVFDSLDSSLP 669 9*************************88888888....********************************************** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpL 367 +seer+k+E+ +++++i+n+vacega+r+erhetle W++r++ aGF++ pls++ ++qaklll+ + dgy + ++ gs+ l W+dr+L Pp3c1_15680V3.1.p 670 LASEERAKIEQLYFAQQIKNIVACEGADRIERHETLELWQKRMKLAGFRQWPLSSHSVTQAKLLLSLSPCDGYCLSQQpGGSISLNWQDRSL 761 ***********************************************************************987255566**** PP GRAS 368 vsvSaW 373 +++S W Pp3c1_15680V3.1.p 762 LTASTW 767 **** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.281	381	747	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.4E-130	407	767	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence Send to blast
MMPPFGSLLE PPTNLRGGQS SFYVKQEPGV DSVRKLRMDT PQSAFSSYRD THPTLRKPLQ 60 HELSAFGPFS AQGQSSMDAS TSNAAPHPPS GDTHTSLRKS ASRQPIQVHQ YLRPAVLQPT 120 TSVSPSKKQC TEKSRQFNDV FLSAHTNAMP SKSSDVGSSG LATGIRDTTS DGFVVVSCKQ 180 MQCKQECDIA STSFSAPPLS RKRSHSELAE ESCDSELVLG VGGRSSVSRE GSEYRNSRAS 240 SPRKSQKSSD TRLDLVSADL CLAPPIVAPE YSSSSSQQEA PSSSMLETQP LGESSKVSHS 300 RGTYVSPTQS HLSFQKIKSK DVSRAEGVTC ISQAESHPTG SRCQQPVRPL LNLEVIKREC 360 DAVERERDNE ESLAQSRNHH EGFELGLFPG VFAADQGKKS EASGLQLVHL LLACADAISK 420 NKIEIATQKL EELYSHASLF GDSMQRIAAF FTEALAARIV GKDNPAYKNL MLQSHLDDYL 480 SAFTTLYKIC PYFQFGHFTA NQAILEAVEG YSVVHIIDMD LMQGFQWPGF IQSLSEREGG 540 PPKLKITGVG TSCTSLQDTG RRLAAFAETY GVPFEFHAVV GELEDLSPME LGAKPGEAVA 600 VNCVMQLHRL LNNGDKLQNF ISGLRSIHPV MLTLVEQEAN HNTSSFMGRF VEALHYYAAV 660 FDSLDSSLPL ASEERAKIEQ LYFAQQIKNI VACEGADRIE RHETLELWQK RMKLAGFRQW 720 PLSSHSVTQA KLLLSLSPCD GYCLSQQPGG SISLNWQDRS LLTASTWVL*

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence Send to blast

MMPPFGSLLE PPTNLRGGQS SFYVKQEPGV DSVRKLRMDT PQSAFSSYRD THPTLRKPLQ  60
HELSAFGPFS AQGQSSMDAS TSNAAPHPPS GDTHTSLRKS ASRQPIQVHQ YLRPAVLQPT  120
TSVSPSKKQC TEKSRQFNDV FLSAHTNAMP SKSSDVGSSG LATGIRDTTS DGFVVVSCKQ  180
MQCKQECDIA STSFSAPPLS RKRSHSELAE ESCDSELVLG VGGRSSVSRE GSEYRNSRAS  240
SPRKSQKSSD TRLDLVSADL CLAPPIVAPE YSSSSSQQEA PSSSMLETQP LGESSKVSHS  300
RGTYVSPTQS HLSFQKIKSK DVSRAEGVTC ISQAESHPTG SRCQQPVRPL LNLEVIKREC  360
DAVERERDNE ESLAQSRNHH EGFELGLFPG VFAADQGKKS EASGLQLVHL LLACADAISK  420
NKIEIATQKL EELYSHASLF GDSMQRIAAF FTEALAARIV GKDNPAYKNL MLQSHLDDYL  480
SAFTTLYKIC PYFQFGHFTA NQAILEAVEG YSVVHIIDMD LMQGFQWPGF IQSLSEREGG  540
PPKLKITGVG TSCTSLQDTG RRLAAFAETY GVPFEFHAVV GELEDLSPME LGAKPGEAVA  600
VNCVMQLHRL LNNGDKLQNF ISGLRSIHPV MLTLVEQEAN HNTSSFMGRF VEALHYYAAV  660
FDSLDSSLPL ASEERAKIEQ LYFAQQIKNI VACEGADRIE RHETLELWQK RMKLAGFRQW  720
PLSSHSVTQA KLLLSLSPCD GYCLSQQPGG SISLNWQDRS LLTASTWVL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-84	414	767	26	378	Protein SCARECROW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024398966.1	0.0	scarecrow-like protein 1
Refseq	XP_024399048.1	0.0	scarecrow-like protein 1
TrEMBL	A0A2K1L8B6	0.0	A0A2K1L8B6_PHYPA; Uncharacterized protein
STRING	PP1S63_181V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5366	13	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	3e-95	RGA-like 1

Link Out ? help Back to Top
Phytozome	Pp3c1_15680V3.1.p