PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_15290V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 254aa MW: 27673.8 Da PI: 8.9132 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.9 | 3.8e-31 | 59 | 115 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +rY+eC +NhA+++Gg++vDGCgEfmp geegt+aal+CaAC+CHRnFHR+e+e e Pp3c1_15290V3.3.p 59 VIRYRECNRNHAITTGGYVVDGCGEFMPG-GEEGTVAALRCAACDCHRNFHRKETEGE 115 689*************************9.999*********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-24 | 56 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.1E-29 | 60 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.0E-27 | 61 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.222 | 62 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-33 | 175 | 251 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.96E-20 | 176 | 250 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.8E-27 | 189 | 246 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MESLVSHKID YTPMPITATF AGLHEFSKLK LLSSTGNGVT TMDEPLLLEA PSVKAKAKVI 60 RYRECNRNHA ITTGGYVVDG CGEFMPGGEE GTVAALRCAA CDCHRNFHRK ETEGETSCDC 120 KYINRNDPRK RGMMVPGAPS QPGGPQQLAL LSPAPIMGRV TPAPYMLAHG LVDSDDGDGG 180 LSGSPSTMKK RFRTKFTNEQ KEKMGVFAEK LGWKIQKHDE AAVQEFCAEV GVKRHVLKVW 240 MHNNKNTIGK KPA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-27 | 190 | 247 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024393207.1 | 0.0 | zinc-finger homeodomain protein 2-like | ||||
Refseq | XP_024393215.1 | 0.0 | zinc-finger homeodomain protein 2-like | ||||
Refseq | XP_024393224.1 | 0.0 | zinc-finger homeodomain protein 2-like | ||||
Swissprot | Q9SB61 | 4e-60 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A2K1L8B0 | 0.0 | A0A2K1L8B0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S230_85V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-56 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_15290V3.3.p |
Publications ? help Back to Top | |||
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