PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c19_8310V3.2.p | ||||||||
Common Name | DELLAa, GAL2, PHYPADRAFT_235433 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | GRAS | ||||||||
Protein Properties | Length: 554aa MW: 60921.2 Da PI: 6.5075 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 419.6 | 2.7e-128 | 184 | 551 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl.fsevsPi 90 lv+ Ll+cAe ++ g+l+ a+++L r++ l+ p g pm ++a++f AL +r+++ ++++ + s++ ++s++ l l++ f+e +P+ Pp3c19_8310V3.2.p 184 LVHSLLACAESIQRGNLSFAEETLRRIELLSLPPG-PMGKVATHFIGALTRRIYG----VASSSgNNSSS--NQSDSLLGLLHFyFYESCPF 268 689*************************9998876.9******************....32222133333..3444444444445******* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 l+f+h+taNqaIleav g ++vH+iDf+++qGlQWpaL+qaL+ R++gpp+lR+Tg+g+p+++ +++l+e+g +La++A++++v+fef+ ++ Pp3c19_8310V3.2.p 269 LRFAHFTANQAILEAVTGLKEVHVIDFNLMQGLQWPALIQALSLRQGGPPRLRLTGIGPPQPSGSDTLQEIGTKLAELAKTVRVDFEFRGVI 360 ******************************************************************************************** PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.ea 273 a +l+d+++++L++++gEa+aVn+vlqlh+ll + ++ + +d+vL lv++l+Pk++++ve+ea+hn++sFl rf+eal+yys++fd+l + Pp3c19_8310V3.2.p 361 AVKLDDIKPWMLQIRHGEAVAVNSVLQLHKLLYSAGPEAP-IDAVLLLVRELKPKIFTIVEHEANHNQPSFLGRFIEALHYYSTMFDALeAC 451 ********************************77777766.************************************************788 PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365 +lp+e++e++ +E lgrei n+vace +r+erhe+l +Wr rl +aG++p++l+ +a kqa++ll +++++gyrvee+ g+l+lgW++r Pp3c19_8310V3.2.p 452 NLPSENNEQVLIEMY-LGREIYNIVACEDGARTERHENLFQWRLRLLKAGYRPIQLGLNAFKQASMLLTMFSGEGYRVEEKLGCLTLGWHSR 542 999999999999977.**************************************************************************** PP GRAS 366 pLvsvSaWr 374 pL+++SaW+ Pp3c19_8310V3.2.p 543 PLIAASAWK 551 ********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.221 | 158 | 531 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.4E-126 | 184 | 551 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016874 | Molecular Function | ligase activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MAYQYSPGGS RWKPTGGTLV DGRLRHDKFT QASDAVQQLE ELHTSLGSVS QDSLNIPAYY 60 TLGSSSQAVS NCSTDLAGWI DCMIEELSSN TACPIMAPQQ QHGLLEGSFL KNDHDASSCR 120 DSLLETGSHR LSNVQFQDTS AARNKSSTAP HNGTSQVNAI RTTAAGLEQQ LNKMGEDENN 180 GIQLVHSLLA CAESIQRGNL SFAEETLRRI ELLSLPPGPM GKVATHFIGA LTRRIYGVAS 240 SSGNNSSSNQ SDSLLGLLHF YFYESCPFLR FAHFTANQAI LEAVTGLKEV HVIDFNLMQG 300 LQWPALIQAL SLRQGGPPRL RLTGIGPPQP SGSDTLQEIG TKLAELAKTV RVDFEFRGVI 360 AVKLDDIKPW MLQIRHGEAV AVNSVLQLHK LLYSAGPEAP IDAVLLLVRE LKPKIFTIVE 420 HEANHNQPSF LGRFIEALHY YSTMFDALEA CNLPSENNEQ VLIEMYLGRE IYNIVACEDG 480 ARTERHENLF QWRLRLLKAG YRPIQLGLNA FKQASMLLTM FSGEGYRVEE KLGCLTLGWH 540 SRPLIAASAW KCA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-62 | 166 | 550 | 1 | 377 | Protein SCARECROW |
5b3h_D | 1e-62 | 166 | 550 | 1 | 377 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF646472 | 0.0 | EF646472.1 Physcomitrella patens DELLA protein (DELLAa) gene, complete cds. | |||
GenBank | EU262750 | 0.0 | EU262750.1 Physcomitrella patens DELLA-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024403888.1 | 0.0 | DELLA protein GAI-like | ||||
TrEMBL | A7U4T6 | 0.0 | A7U4T6_PHYPA; AtGAI1 GRAS E3 ubiquitin ligase protein | ||||
STRING | PP1S175_16V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 1e-141 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c19_8310V3.2.p |
Entrez Gene | 5937584 |
Publications ? help Back to Top | |||
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