PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_22680V3.3.p
Common NamePHYPADRAFT_172783
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 706aa    MW: 75995.7 Da    PI: 4.7486
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_22680V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-08542566126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +k +lC+f+ + G C  G++C+F+H+
  Pp3c19_22680V3.3.p 542 PKVPLCKFYIK-GRCTLGGKCTFSHD 566
                         699********.*************7 PP
2zf-CCCH25.32.7e-08598622327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         t +C+f++  G+C  G++C+F+Hgp
  Pp3c19_22680V3.3.p 598 TFPCKFWHTRGHCLDGSNCRFSHGP 622
                         779********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.76541568IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6541567IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6542566IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5542566IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4543566IPR000571Zinc finger, CCCH-type
SMARTSM003560.0047570596IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.051571594IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5573595IPR000571Zinc finger, CCCH-type
PfamPF146080.01575594No hitNo description
PROSITE profilePS5010314.84595623IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-5598622IPR000571Zinc finger, CCCH-type
SMARTSM003560.0079598622IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-13599642IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4600622IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MGGLSYSRSS FETALSCCRS SPIGAGETMN NLAGSECVSS YVGHLVSSPG SQKGEVCSDA  60
SEGSQLRVSS LVSSLDPNPA QLPSPISPAL ESESDVAADS SVNNPMVGLS SSILLSTSAD  120
VLPGIGSSSC NLVANSSPRS SPAQSISPLP EHLESVFTDL ANVPGSEPST TAELQSRLLS  180
GDAASRSSDI LGSFLNAGRD GSTNSQDLSS PRTVAGVSDG PVADELDSMV SRSFQSNTAS  240
ELSVSIVNSS TNIATSSGDQ IIVTTGEHEK LEVKVQELEH EILEEGELED GELSAGWESG  300
EDDEVDDEAA DPIDYRDDKY EDRTEEPEEE GDEGIFDYRT EGLTPVVTRF AADVRMNQTS  360
AGGAGSQLGK VHKKNNKRRK GKGALSRQRK KSRLERALKV SNEATTEFNA DGGQQGDRLA  420
IVSKQVESID TVRRAGEKQQ KGSKKVETDA GVEEGEVIEE DNRGLLSQLV EEEVGLWTTD  480
VGDEQISSSK IDSDEDGKKK TRAPISAERK LKKKIAFRRK RAEKEKELGI RRPRLPVNTF  540
KPKVPLCKFY IKGRCTLGGK CTFSHDVVPV TKSDPCKFFM VNRCLKGDDC PFSHTLDTFP  600
CKFWHTRGHC LDGSNCRFSH GPLTNDQRQN LAKRIEHDTK EQQTAPSAPI DFNTSEDSYS  660
EYMPTMNSAQ TETSGWDVSL LKPLHQGTGS NASTSMTAQS LQNTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cqe_A8e-145726401278KIAA1064 protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377390RRKGKGALSRQRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403936.10.0uncharacterized protein LOC112296057
TrEMBLA0A2K1IZB30.0A0A2K1IZB3_PHYPA; Uncharacterized protein
STRINGPP1S380_13V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.17e-06C3H family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]