PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c19_17160V3.3.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 404aa MW: 42933.2 Da PI: 9.2819

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c19_17160V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	35	58	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+ C+k s+ s ++ H H Pp3c19_17160V3.3.p 35 FKCHVCHKKLSSASGMVIHVLQvH 58 89*****************87655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50808	11.992	6	65	IPR003656	Zinc finger, BED-type
SMART	SM00355	15	11	34	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	13	34	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.072	35	58	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	37	58	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MGKKKKKTFK VWCFYCEREF EDEKILIQHQ KAKHFKCHVC HKKLSSASGM VIHVLQVHKE 60 SVSKVPNAKS ERESLIDLEI YGMEGIPADI LAAHDGDYDE DENPSKVARV EVPPSLPFVG 120 GGMMGSNAIG MAPQPMYTAT QPMYRPPPGS GPRPPSNWQP QPPPPQGWGG PLHGQPGPPR 180 MPQPPQPLFP IQGQRPSPPS QPPPQPLFPI RPPLPPGSAP PPPRPLFPVA QTPNGPPPPL 240 PPPAPPLSSA GSVVKPPPPS PGSNQSSING SPAMAPSLPP SGASPGVNMG AGVNARLPPS 300 PYGAMSGPPP PPPSSHMYSS GPNTGGPSIG PPPVISNKPP GPAGGTNEVY LVWDDEFFSM 360 EERRAALRKY QVHDETMQMS SVDAAIDRRI LEGRLAGRMS FHV*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MGKKKKKTFK VWCFYCEREF EDEKILIQHQ KAKHFKCHVC HKKLSSASGM VIHVLQVHKE  60
SVSKVPNAKS ERESLIDLEI YGMEGIPADI LAAHDGDYDE DENPSKVARV EVPPSLPFVG  120
GGMMGSNAIG MAPQPMYTAT QPMYRPPPGS GPRPPSNWQP QPPPPQGWGG PLHGQPGPPR  180
MPQPPQPLFP IQGQRPSPPS QPPPQPLFPI RPPLPPGSAP PPPRPLFPVA QTPNGPPPPL  240
PPPAPPLSSA GSVVKPPPPS PGSNQSSING SPAMAPSLPP SGASPGVNMG AGVNARLPPS  300
PYGAMSGPPP PPPSSHMYSS GPNTGGPSIG PPPVISNKPP GPAGGTNEVY LVWDDEFFSM  360
EERRAALRKY QVHDETMQMS SVDAAIDRRI LEGRLAGRMS FHV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.6297	0.0	protonema

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Barely detectable in 3-days-old seedling, and then increases. {ECO:0000269\|PubMed:17138694}.
Uniprot	TISSUE SPECIFICITY: Expressed in root, shoot apex, leaves, stem and flowers. Expressed in expanding leaves, in the vasculature of fully expanded leaves, in the inflorescence, throughout young floral primordia, in the carpels of older flowers and in fertilized ovules. {ECO:0000269\|PubMed:17079264, ECO:0000269\|PubMed:17138694}.

Functional Description ? help Back to Top
Source	Description
UniProt	Sequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269\|PubMed:17079264, ECO:0000269\|PubMed:17138694, ECO:0000269\|PubMed:19121105, ECO:0000269\|PubMed:21282526}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269\|PubMed:17079264, ECO:0000269\|PubMed:17138694}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024356739.1	0.0	protein SUPPRESSOR OF FRI 4-like
Swissprot	Q9C5G0	1e-108	SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBL	A0A2K1IYR3	0.0	A0A2K1IYR3_PHYPA; Uncharacterized protein
STRING	PP1S495_7V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30970.1	1e-52	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pp3c19_17160V3.3.p

Publications ? help Back to Top
Ding L,Kim SY,Michaels SD FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis. Plant Physiol., 2013. 163(1): p. 243-52 [PMID:23899645] Resentini F, et al. SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression. Plant Physiol., 2017. 173(1): p. 155-166 [PMID:27920160]