PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c19_17160V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 404aa MW: 42933.2 Da PI: 9.2819 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 35 | 58 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+ C+k s+ s ++ H H Pp3c19_17160V3.2.p 35 FKCHVCHKKLSSASGMVIHVLQvH 58 89*****************87655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50808 | 11.992 | 6 | 65 | IPR003656 | Zinc finger, BED-type |
SMART | SM00355 | 15 | 11 | 34 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 13 | 34 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.072 | 35 | 58 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 37 | 58 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MGKKKKKTFK VWCFYCEREF EDEKILIQHQ KAKHFKCHVC HKKLSSASGM VIHVLQVHKE 60 SVSKVPNAKS ERESLIDLEI YGMEGIPADI LAAHDGDYDE DENPSKVARV EVPPSLPFVG 120 GGMMGSNAIG MAPQPMYTAT QPMYRPPPGS GPRPPSNWQP QPPPPQGWGG PLHGQPGPPR 180 MPQPPQPLFP IQGQRPSPPS QPPPQPLFPI RPPLPPGSAP PPPRPLFPVA QTPNGPPPPL 240 PPPAPPLSSA GSVVKPPPPS PGSNQSSING SPAMAPSLPP SGASPGVNMG AGVNARLPPS 300 PYGAMSGPPP PPPSSHMYSS GPNTGGPSIG PPPVISNKPP GPAGGTNEVY LVWDDEFFSM 360 EERRAALRKY QVHDETMQMS SVDAAIDRRI LEGRLAGRMS FHV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.6297 | 0.0 | protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Barely detectable in 3-days-old seedling, and then increases. {ECO:0000269|PubMed:17138694}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root, shoot apex, leaves, stem and flowers. Expressed in expanding leaves, in the vasculature of fully expanded leaves, in the inflorescence, throughout young floral primordia, in the carpels of older flowers and in fertilized ovules. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Sequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024356739.1 | 0.0 | protein SUPPRESSOR OF FRI 4-like | ||||
Swissprot | Q9C5G0 | 1e-108 | SUF4_ARATH; Protein SUPPRESSOR OF FRI 4 | ||||
TrEMBL | A0A2K1IYR3 | 0.0 | A0A2K1IYR3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S495_7V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30970.1 | 1e-52 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c19_17160V3.2.p |
Publications ? help Back to Top | |||
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