PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_13320V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 334aa    MW: 37881.2 Da    PI: 6.3795
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_13320V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.53.9e-1485168280
            trihelix   2 WtkqevlaLiearremeerlrrg.....klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                         W  +e l+L +a+re+ +r  rg     +  + +W ++ +++++ g++rs++qC +kwe +++ ykk+ ++ek   ++++s + 
  Pp3c19_13320V3.4.p  85 WVVEEMLVLQAAKREDFHRHDRGmkgiqNPVQERWNWIEDYCWASGVQRSAQQCHDKWEVISTAYKKVYNNEKYACNGHKSYWN 168
                         99************999999996444446889***************************************9998777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.1E-983168No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDLHSGEFRT DISLVDTHHS PSEGDEAHLS DPDHILHDSN GSHVNGNSHL MHASNHHSLI  60
TLEDEVVYGH PQGSRCGRLY KKSNWVVEEM LVLQAAKRED FHRHDRGMKG IQNPVQERWN  120
WIEDYCWASG VQRSAQQCHD KWEVISTAYK KVYNNEKYAC NGHKSYWNMS PEERKRNKLP  180
PNFQKEVFSA LLEWCDTKIK HSDSGELVVD TSGPQGPSGV KAELVDSEDE SGEETSGPNQ  240
FGKKRKLWSK TDEALATILV RNNKNVVEAM LESEDRKDKR HREDLEMEKV KLELEKEKFR  300
GAMKLGSGYI DALVNIGDGL KQLSAALCAN IHS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.43510.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403989.10.0uncharacterized protein LOC112296082
RefseqXP_024403990.10.0uncharacterized protein LOC112296082
RefseqXP_024403992.10.0uncharacterized protein LOC112296082
RefseqXP_024403993.10.0uncharacterized protein LOC112296082
RefseqXP_024403994.10.0uncharacterized protein LOC112296082
RefseqXP_024403995.10.0uncharacterized protein LOC112296082
TrEMBLA0A2K1IYA70.0A0A2K1IYA7_PHYPA; Uncharacterized protein
STRINGPP1S20_334V6.40.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-21Trihelix family protein