PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c19_13320V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Trihelix | ||||||||
Protein Properties | Length: 334aa MW: 37881.2 Da PI: 6.3795 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 44.5 | 3.9e-14 | 85 | 168 | 2 | 80 |
trihelix 2 WtkqevlaLiearremeerlrrg.....klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 W +e l+L +a+re+ +r rg + + +W ++ +++++ g++rs++qC +kwe +++ ykk+ ++ek ++++s + Pp3c19_13320V3.3.p 85 WVVEEMLVLQAAKREDFHRHDRGmkgiqNPVQERWNWIEDYCWASGVQRSAQQCHDKWEVISTAYKKVYNNEKYACNGHKSYWN 168 99************999999996444446889***************************************9998777776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.1E-9 | 83 | 168 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MDLHSGEFRT DISLVDTHHS PSEGDEAHLS DPDHILHDSN GSHVNGNSHL MHASNHHSLI 60 TLEDEVVYGH PQGSRCGRLY KKSNWVVEEM LVLQAAKRED FHRHDRGMKG IQNPVQERWN 120 WIEDYCWASG VQRSAQQCHD KWEVISTAYK KVYNNEKYAC NGHKSYWNMS PEERKRNKLP 180 PNFQKEVFSA LLEWCDTKIK HSDSGELVVD TSGPQGPSGV KAELVDSEDE SGEETSGPNQ 240 FGKKRKLWSK TDEALATILV RNNKNVVEAM LESEDRKDKR HREDLEMEKV KLELEKEKFR 300 GAMKLGSGYI DALVNIGDGL KQLSAALCAN IHS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.4351 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024403989.1 | 0.0 | uncharacterized protein LOC112296082 | ||||
Refseq | XP_024403990.1 | 0.0 | uncharacterized protein LOC112296082 | ||||
Refseq | XP_024403992.1 | 0.0 | uncharacterized protein LOC112296082 | ||||
Refseq | XP_024403993.1 | 0.0 | uncharacterized protein LOC112296082 | ||||
Refseq | XP_024403994.1 | 0.0 | uncharacterized protein LOC112296082 | ||||
Refseq | XP_024403995.1 | 0.0 | uncharacterized protein LOC112296082 | ||||
TrEMBL | A0A2K1IYA7 | 0.0 | A0A2K1IYA7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S20_334V6.4 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 1e-21 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c19_13320V3.3.p |