PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c19_12520V3.2.p

Common Name

PHYPADRAFT_149624

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 290aa MW: 34975.8 Da PI: 7.5044

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c19_12520V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.5	2.3e-20	25	119	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.........sessstcpyf 82 +W +e+++ i++r e+e+++ +++++k+lW + +km+e+g++rs+ qCk+kw+nl +ryk +++e + + +e+ ++cp+f Pp3c19_12520V3.2.p 25 QWGYHETKEFIAVRAELEKDFTQTRRNKTLWVLIERKMKEKGYRRSADQCKCKWKNLVNRYKGKETSEPDYEfpqgkdpiyPENGRQCPFF 115 7**************************************************************9999865321111112225566777777 PP trihelix 83 dqle 86 d+l+ Pp3c19_12520V3.2.p 116 DELD 119 7776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	2.69E-23	24	89	No hit	No description
Pfam	PF13837	2.7E-18	25	121	No hit	No description
PROSITE profile	PS50090	6.504	26	82	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MNHPDLGSLT PGRGRGHKKE DRIPQWGYHE TKEFIAVRAE LEKDFTQTRR NKTLWVLIER 60 KMKEKGYRRS ADQCKCKWKN LVNRYKGKET SEPDYEFPQG KDPIYPENGR QCPFFDELDA 120 IFKERAKNSD KSLLESELGS RGKKKGKRGK TKSDDDDDSE DDDEEEESEE DRVVQRKKRK 180 NEKENNRPRV TAEKYRANSM QEVLEDFFQQ QQRVEEQWRE SVERREQERR LREQEWRDAM 240 EKLEQERIAR EHMWREREEQ KRIRDEARAQ KRDELFAALL TKLAQDEGY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024403345.1	0.0	trihelix transcription factor GT-3b-like
TrEMBL	A0A2K1IY67	0.0	A0A2K1IY67_PHYPA; Uncharacterized protein
STRING	PP1S301_48V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	1e-28	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c19_12520V3.2.p
Entrez Gene	5944579

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]