PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c19_12480V3.2.p

Common Name

PHYPADRAFT_149607

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 309aa MW: 37024.3 Da PI: 5.7201

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c19_12480V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.7	4.7e-21	44	138	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.........sessstcpyf 82 +W +e+++Li +r e+e+++ k++k+lWe + +km+e+gf+rs+ qCk+kw+nl + yk ++ e + + +e+ ++cp+f Pp3c19_12480V3.2.p 44 QWGYHETKQLISIRAELEKDFALIKRNKTLWELIERKMMEKGFRRSADQCKCKWKNLVNLYKGKETFEPDYEfpqgkdpiyPENGRQCPFF 134 7*************************************************************99876654321111111225566677777 PP trihelix 83 dqle 86 d+l+ Pp3c19_12480V3.2.p 135 DELD 138 7776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.9E-18	44	140	No hit	No description
CDD	cd12203	2.94E-23	44	108	No hit	No description
PROSITE profile	PS50090	7.108	45	101	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MAENLSVLPN SISLQGSHDT NYPDLGTLTP VRGRILKKDD RILQWGYHET KQLISIRAEL 60 EKDFALIKRN KTLWELIERK MMEKGFRRSA DQCKCKWKNL VNLYKGKETF EPDYEFPQGK 120 DPIYPENGRQ CPFFDELDAI FKERAKNSDK SLLESELGSR GKKKGKRGKT KSDDDDDSED 180 DDEEEESEED RVVQRKKRKN EKENNRPRVT AEKYRANSMQ EVLEDFFQQQ QRVEEQWRES 240 VERREQERRL REQEWRDAME KLEQERIARE HMWREREEQK RIRDEARAQK RDELFAALLT 300 KLAQDEGY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024356664.1	0.0	trihelix transcription factor GT-3b-like isoform X1
Refseq	XP_024356665.1	0.0	trihelix transcription factor GT-3b-like isoform X1
TrEMBL	A0A2K1IY74	0.0	A0A2K1IY74_PHYPA; Uncharacterized protein
STRING	PP1S301_41V6.1	1e-179	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	1e-25	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c19_12480V3.2.p
Entrez Gene	5944576

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]