PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_7410V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 937aa    MW: 98046.7 Da    PI: 7.4986
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_7410V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07843892147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        r +++ +E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Pp3c18_7410V3.3.p 843 RRPFSVQEVEALVHAVEKLGTGRWRDVKLRAFeqaKHRTYVDLKDKWKTL 892
                        6799**********************9888888**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.084838897IPR017930Myb domain
SMARTSM007174.5E-7842895IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-10843893IPR009057Homeodomain-like
SuperFamilySSF466899.87E-14844924IPR009057Homeodomain-like
CDDcd116604.81E-17844894No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0008301Molecular FunctionDNA binding, bending
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 937 aa     Download sequence    Send to blast
MEARIRRVGG GFPGYEGPTL PRGLRSQRGR SGDAAKGHGV NLARTGVFEL LATVAGQILQ  60
DARSDDPNGA KQGDGEGARG KSQSGMDSQI SGLDSVKDFT SVDKPQSSGS GNAYAGGVTH  120
VSSVDEVSVE GSNDGESASC GARSPAQEED RGAFVKDVAV DEGSGAVVHT KGSAMEGVVM  180
APVCDSDMSS TQAGGEVGSP RCGVKEMVQV SGTYGGSREV ERYSTEEVGA AATSEGMACD  240
TAAEERTHAA VEVVGEEMVV VEAGVGVKQA SSKSEAVVSE ALVCSKSMEA EGVCGPMDGG  300
GCEGWKRSAT SVAEMQMQCK MSESEEYGES AEVMEEGEEG MEDDDAGSME VEVEVEERKV  360
VVSGKSKGRG GSCGRLAVAS PGVAECKSSR PMVRRVMSRV EGKFYKKEHG YGTSQRVHPE  420
TMTTKLESYS RSLKVRRAVK VAKRNHVGGT RAKRQHAEME STDSGCSEDC GYGKKSYLGG  480
MGAYTRQRTT RGAANKRRKV ADGSPKTGPD LHLSSSDLME LEYECVGGEP PAAAAKIRSA  540
KAASVASSPT SRSAKLGSKK SAETHVKLSI KSFTVPELFV DLPETASVGS LKRAVMDAAM  600
NLLGGGLRVR VLMQGKKVPD EGATLSQIGI SREAKAESVG FMLEPSPVVT SSCGTGEDPL  660
LVLSRAANQP APRYPVYGVG GVSGMGDGSV RCAMKGRASK SSGTVVDPDP SYVPPSASSE  720
QEGYVEGRRS GVAVSVSPEE SVKGCNKHVS ERMAISAHPT RVAAAGALAA IRAQADASRR  780
ARNEVESGCT SPESCGQDSA VGGSGAIILH PGVSGGENVG GMALVPLRNK IARALDNGKR  840
RVRRPFSVQE VEALVHAVEK LGTGRWRDVK LRAFEQAKHR TYVDLKDKWK TLVHTARIAP  900
HQRRGEPVPP DLLDRVTRAH AFWTAHAAKQ QADLDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-448269331107Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402291.10.0uncharacterized protein LOC112295236 isoform X1
RefseqXP_024402292.10.0uncharacterized protein LOC112295236 isoform X1
TrEMBLA9TRP60.0A9TRP6_PHYPA; Predicted protein
STRINGPP1S299_16V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.17e-45TRF-like 2