PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_4830V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 656aa    MW: 71140.5 Da    PI: 4.1881
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_4830V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS386.14e-1182906531373
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        lv+lLl+cAea++++++  a+ +L+rl+ +++p+gdpmqR+  yf+ AL+ rl++++++ ++a p s+     + ++  a++ f+ev P+ k
  Pp3c18_4830V3.2.p 290 LVHLLLACAEAIEESNFDTARPMLSRLKAISNPYGDPMQRISLYFADALSDRLTKESETPVSAAPISSPV---ELDTDLAYQSFYEVLPFAK 378
                        68*****************************************************777777777777666...67788899*********** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                        f+h+taNqaI eav  ++++H++D+di+qGlQWp++lq+La Rp+gppsl+iT+vg     ++ +l+ t++rL++fA++l+vpfe  v +++
  Pp3c18_4830V3.2.p 379 FTHFTANQAIFEAVGYHNKIHVVDLDIQQGLQWPSFLQTLALRPGGPPSLKITAVGT----NAASLQLTKRRLSEFAQALEVPFELIV-LVE 465
                        *********************************************************....99************************9.599 PP

               GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                        +l++l+ e+++++p+EalaVn++  lhrl  +++ l++    +L l++sl+P+vv++ e ea+hn++++  rf+eal+yy alfd+lea+++
  Pp3c18_4830V3.2.p 466 DLDNLDKEKFQIEPDEALAVNCSQVLHRLSGSEAVLQK----LLLLLRSLNPEVVTLLEVEANHNGANLISRFVEALHYYCALFDALEASVS 553
                        9****************************987777777....************************************************** PP

               GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg..yrveeesgslvlgWkdr 365
                        ++s +r  +E+  l+ ei+ +va eg+ r +rh + e+W++ ++++GF++ pls++a++qa+lll  +  ++   y++ ee g l++gW+d 
  Pp3c18_4830V3.2.p 554 SDSPDRFRIENITLASEIRGIVALEGSGRGARHVKSETWQSHFTKCGFRNRPLSSYAVQQAQLLLGYFVtGETptYKLSEEFGVLIMGWQDT 645
                        ******************************************************************998544477***************** PP

               GRAS 366 pLvsvSaW 373
                        p+++vS+W
  Pp3c18_4830V3.2.p 646 PVMAVSSW 653
                        ******** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.175264631IPR005202Transcription factor GRAS
PfamPF035141.4E-115290653IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MTLQILSKRS CPVEVGPSAK RWKSQSSWAI EGVAPVAATS AAAEAAEGSA CVKQEDPITL  60
QEPTSVLDLQ TSPGRSSSSG SLSSHSSLSG DETSFPSLAG TDICSEDQTS SELLPVSTVE  120
SVHNDHDIAS WMECMEDPNG PLALTDFSKC EEGGEVRQAE VKLDGGIETG IDHFVNADID  180
FGFELSLDDN DHEAFANYML SDPGLCLMDE PKFLNFPEGF QDAHRLLELG DSLSSMIDSA  240
PGIGVGEVQS SDASSTPGSD VSYEPGYSGS QNWESNPLEV QQPLDSGLQL VHLLLACAEA  300
IEESNFDTAR PMLSRLKAIS NPYGDPMQRI SLYFADALSD RLTKESETPV SAAPISSPVE  360
LDTDLAYQSF YEVLPFAKFT HFTANQAIFE AVGYHNKIHV VDLDIQQGLQ WPSFLQTLAL  420
RPGGPPSLKI TAVGTNAASL QLTKRRLSEF AQALEVPFEL IVLVEDLDNL DKEKFQIEPD  480
EALAVNCSQV LHRLSGSEAV LQKLLLLLRS LNPEVVTLLE VEANHNGANL ISRFVEALHY  540
YCALFDALEA SVSSDSPDRF RIENITLASE IRGIVALEGS GRGARHVKSE TWQSHFTKCG  600
FRNRPLSSYA VQQAQLLLGY FVTGETPTYK LSEEFGVLIM GWQDTPVMAV SSWSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-8529765425378Protein SCARECROW
5b3h_D9e-8529765425378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.104220.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402722.10.0DELLA protein RGL2-like
TrEMBLA0A2K1IZX80.0A0A2K1IZX8_PHYPA; Uncharacterized protein
STRINGPP1S17_52V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.17e-85RGA-like 2