PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_18720V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family TALE
Protein Properties Length: 584aa    MW: 66266.7 Da    PI: 6.1626
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_18720V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.32.3e-075085551054
                         HHHHHHHHHHHH...SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  10 eqleeLeelFek...nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         +  ++L++ F++    +yps+ e++ L + +gL+ +q+ +WF N R +
  Pp3c18_18720V3.1.p 508 SARTILKDWFNRhshWPYPSEMEKQYLQRICGLNLKQINNWFINERKR 555
                         56789999999633369*****************************88 PP
2ELK27.95.3e-10476497122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ++K++L++KY+ ++g Lk+EF+
  Pp3c18_18720V3.1.p 476 DIKKALRKKYGRHIGELKAEFN 497
                         58*******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.5E-12261305IPR005540KNOX1
PfamPF037901.2E-12263304IPR005540KNOX1
SMARTSM012561.3E-16311362IPR005541KNOX2
PfamPF037912.9E-18314361IPR005541KNOX2
PROSITE profilePS512139.778476496IPR005539ELK domain
PfamPF037894.3E-6476497IPR005539ELK domain
SMARTSM011887.9E-4476497IPR005539ELK domain
PROSITE profilePS5007111.386496559IPR001356Homeobox domain
SMARTSM003891.7E-8498563IPR001356Homeobox domain
SuperFamilySSF466891.37E-16500566IPR009057Homeodomain-like
CDDcd000865.85E-11500557No hitNo description
Gene3DG3DSA:1.10.10.605.2E-24501558IPR009057Homeodomain-like
PfamPF059201.5E-15516555IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MAGSSERESV GRLVTLQPGH FHSRYSEAVD PMMRDFWRRT SDRESRQEVH RNQSGRGNGQ  60
TSVVDFAQRL EEHSSFQPYS FMEQQTPSAS VNVDSEARSC LTSSHNVYNT SSSAYTNFFN  120
TTAYLPECHT MRPPAPPTYI TTDTHRREGY STSPFAPSCS NFSTLNCSAA HDMASEGSIN  180
RDMEKFQQEL AYKCPRSSDL LLAITTSANT AVREHGSSAE RRRRGNSGLF GNMSLLTEDE  240
DDAPDAQDPE FEDNPQSEQD LELRAAIIDH PFYPEMVLAH VRVFKIGAPR RLRRKLDELA  300
KKFQRFQDCD HTSKIGSDPE LDHFMRSYVG VLTKFAEDLE EPFNKFIQFT DNTSKALEEI  360
CGHYVDSESH PHPIHGTLVN LGLKNNVVLL SESIEKPKGA KYGILLIKLR SNHDLTESVE  420
VCAATPDEDN CGFDIGPLEY GAQEGDDLDT LGDENVMYPL DIDESVIVDP MASDEDIKKA  480
LRKKYGRHIG ELKAEFNRVR KKGKLPTSAR TILKDWFNRH SHWPYPSEME KQYLQRICGL  540
NLKQINNWFI NERKRHWSCE GKCMHPNAKF YGTSNGQCRG HLE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2667450.0AB266745.1 Physcomitrella patens MKN2 gene for knotted1-like homeobox transcription factor MKN2, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1J1K40.0A0A2K1J1K4_PHYPA; Uncharacterized protein
STRINGPP1S33_357V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32040.13e-27KNOTTED1-like homeobox gene 5